View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11168_low_7 (Length: 601)
Name: NF11168_low_7
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 11 - 532
Target Start/End: Complemental strand, 4028847 - 4028328
Alignment:
| Q |
11 |
atgaaccgaaaagctaagtttcccctacaaaatgtaacaaatagtagcaacagaaatatcaaaatgccatttagtatactgcccaacagctggtcatcga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4028847 |
atgaaccgaaaagctaagtttcccctacaaaatgtaacaaatagtagcaacagaaatatcaaaatgccatttagtatactgtccaacagctggtcatcga |
4028748 |
T |
|
| Q |
111 |
ggctccaaacgcagaaaatccaaagcaaccgataatgactctctgtcaagaagcagaacagtttaaagaccaacaagtggattagtccaccaatccgata |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4028747 |
ggctccaaacgcagaaaatccaaagcaaccgataatgactctctgtcaa--agcagaacagtttaaagaccaacaagtggattagtccaccaatccgata |
4028650 |
T |
|
| Q |
211 |
atactaaatttttattcctacactccatgcaaatgaaccaagaccatgatattcgcttaattcgaccaaccaccgcaagaacattagcgacttttctgtt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4028649 |
atactaaatttttattcctacactccatgcaaatgaaccaagaccatgatattcgcttaattcgaccaaccaccgcaagaacattagcgacttttctgtt |
4028550 |
T |
|
| Q |
311 |
gaaaatgatatcatggcattccaacaaaatgcaccaaactgttgttaaccaaatcaagtgagagactttccgacccttctttcctttgcaaagaaaattg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4028549 |
gaaaatgatatcatggcattccaacaaaatgcaccaaactgttgttaaccaaattaagtgagagactttccgacccttctttcctttgcaaagaaaattg |
4028450 |
T |
|
| Q |
411 |
aacaatagaaaggtatctactatctcgtagctccaaccatttgaaaattagatcccaacaattcctcttaatgaagagagttaaattatgagacatttgg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4028449 |
aacaatagaaaggtatctactatctcgtagctccaaccatttgaaaattagatcccaacaattcctcttaatgaagagagttaaattatgagacatttgg |
4028350 |
T |
|
| Q |
511 |
aagaaaaaggtcaaggttagtt |
532 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4028349 |
aagaaaaaggtcaaggttagtt |
4028328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 26619007 - 26619056
Alignment:
| Q |
387 |
ttctttcctttgcaaagaaaattgaacaatagaaaggtatctactatctc |
436 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
26619007 |
ttctttcctttgcaaaacaaattgaacaatagaaaattatctactatctc |
26619056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University