View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_73 (Length: 238)
Name: NF11168_low_73
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49543309 - 49543095
Alignment:
| Q |
1 |
tttccgtttaaccagtttttaaaatagcttcaccaaaacaaccaaacagtctcctttcaaactttcaagattagaaacttcactcacaagccctaatctt |
100 |
Q |
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| T |
49543309 |
tttccgtttaaccagtttttaaaatagcttcaccaaaacaaccaaacagtctcctttcaaactttcaaga-------cttcactcacaagccctaatctt |
49543217 |
T |
|
| Q |
101 |
ctttcagataaagatagtacagaaggatgaggtattacctctcgatcctgtactttttgtgacaactttataaatccatggtaacaaaagtagtggcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49543216 |
ctttcagataaagatagtacagaaggatgaggtattacctctcgatcctgtactttttgtgacaactttataaatccatggtaacaaaagtagtggcttt |
49543117 |
T |
|
| Q |
201 |
ctaaaaacagtaatttactaac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
49543116 |
ctaaaaacagtaatttactaac |
49543095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 47609099 - 47608878
Alignment:
| Q |
1 |
tttccgtttaaccagtttttaaaatagcttcaccaaaacaaccaaacagtctcctttcaaactttcaagattagaaacttcactcacaagccctaatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
47609099 |
tttccgtttaaccagtttttaaaatagcttcaccaaaacaaccaaacagtctcctttcaaactttcaagattagaaccttcactgacaagccctaatctt |
47609000 |
T |
|
| Q |
101 |
ctttcagataaagatagtacagaaggatgaggtattacctctcgatcctgtactttttgtgacaactttataaatccatggtaacaaaagtagtggcttt |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
47608999 |
ctttcagataaagatagtacacaaggatgaggtattacctctcgatcgtatactgtctgtgacaactttataaatccatggtaacaagagtagtggtttt |
47608900 |
T |
|
| Q |
201 |
ctaaaaacagtaatttactaac |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
47608899 |
ctaaaaacagtaatttactaac |
47608878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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