View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_74 (Length: 238)
Name: NF11168_low_74
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 33820723 - 33820802
Alignment:
| Q |
144 |
ccctccaaaattctctcttctaacagtctccaaaaatttcctcccaaacaaacttttggactacgcactctagttatagt |
223 |
Q |
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| T |
33820723 |
ccctccaaaattctctcttctaacactctccaaaaatttcctcccaaacaaacttttggactacgcactctagttatagt |
33820802 |
T |
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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33820581 - 33820642
Alignment:
| Q |
1 |
ttttgattcaagaaaattataaaagtatctaaaaaagaatgaagtgtgatgattgattcgct |
62 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33820581 |
ttttgattcaagaaaattatagaagtatctaaaaaagaatgaagtgtgatgattgattcgct |
33820642 |
T |
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