View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11168_low_85 (Length: 216)
Name: NF11168_low_85
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_85 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 6007000 - 6007172
Alignment:
| Q |
20 |
atgaatacgacaaatcaatacaagttaagcccttcaatctcaccaacgagtcaataaaaatattgtgattaccaataccaaataacctcaatttactaaa |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6007000 |
atgaatacgacaaatcaagacaagttaagcctttcaatttcaccaacgagtcaataaaaatattgtgattaccaataccaaatagcctcaatttactaaa |
6007099 |
T |
|
| Q |
120 |
agaaagagacttcaaacccggcctctcgcaaatagcagaagcaaccccataatgagttatgaacgagcatttc |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6007100 |
agaaagagacttcaaacccggcctctcgcaaatagcagaagcaaccccataatgagttatgaacgagcatttc |
6007172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 3438080 - 3438026
Alignment:
| Q |
20 |
atgaatacgacaaatcaatacaagttaagcccttcaatctcaccaacgagtcaat |
74 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||||| ||||||||| ||||||| |
|
|
| T |
3438080 |
atgaagacgacaaatcaagacaagttaatcccttcagactcaccaacaagtcaat |
3438026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 547596 - 547641
Alignment:
| Q |
31 |
aaatcaatacaagttaagcccttcaatctcaccaacgagtcaataa |
76 |
Q |
| |
|
||||||| |||||||||||||||||| | || |||||||||||||| |
|
|
| T |
547596 |
aaatcaagacaagttaagcccttcaaacacatcaacgagtcaataa |
547641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 1527631 - 1527559
Alignment:
| Q |
22 |
gaatacgacaaatcaatacaagttaagcccttcaatctcaccaacgagtcaataaaaatattgtgattaccaa |
94 |
Q |
| |
|
||||| || ||||||| ||||||||||||| |||| |||||||||| | ||||||||| ||| |||| |||| |
|
|
| T |
1527631 |
gaatatgataaatcaagacaagttaagcccatcaaattcaccaacgactgaataaaaatgttgagatttccaa |
1527559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 55908152 - 55908104
Alignment:
| Q |
26 |
acgacaaatcaatacaagttaagcccttcaatctcaccaacgagtcaat |
74 |
Q |
| |
|
||||||||| || |||||||||||| ||||| |||||||||||| |||| |
|
|
| T |
55908152 |
acgacaaattaagacaagttaagccattcaaactcaccaacgagccaat |
55908104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 10615269 - 10615317
Alignment:
| Q |
30 |
caaatcaatacaagttaagcccttcaatctcaccaacgagtcaataaaa |
78 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||||||| |||||||||||| |
|
|
| T |
10615269 |
caaatcaagacaagtcaagcccttcaaactcaccaatgagtcaataaaa |
10615317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University