View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_87 (Length: 214)
Name: NF11168_low_87
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_87 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 7 - 214
Target Start/End: Original strand, 54264415 - 54264628
Alignment:
| Q |
7 |
aacacctactcaaataaacacacacatagagagagaatgtggtgatgagtttgaattcaagattcttcataaaatgtagaaataagaaagaaagnnnnnn |
106 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54264415 |
aacacctactcaaataaacatacacatagagagagaatgtggtgatgagtttgaattcaagattcttcataaaatgtagaaataagaaagaaagaaaaaa |
54264514 |
T |
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| Q |
107 |
ngctcatatttacttgtcatcttc------nnnnnnnnnnnnnnnncttcatctattcataaatcaattaataatgttgcatttgattttgaaaataaca |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54264515 |
agctcatatttacttgtcatcttcaaaacaaaaacaaaaacaaaaacttcatctattcataaatcaattaataatgttgcatttaattttgaaaataaca |
54264614 |
T |
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| Q |
201 |
aataaaaaaggagc |
214 |
Q |
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|||||||||||||| |
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| T |
54264615 |
aataaaaaaggagc |
54264628 |
T |
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