View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11168_low_9 (Length: 581)

Name: NF11168_low_9
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11168_low_9
NF11168_low_9
[»] chr4 (30 HSPs)
chr4 (87-398)||(26631017-26631337)
chr4 (87-395)||(36846359-36846674)
chr4 (281-398)||(35348795-35348912)
chr4 (199-398)||(39056423-39056631)
chr4 (478-561)||(26631430-26631513)
chr4 (284-398)||(1521198-1521312)
chr4 (293-398)||(26629789-26629894)
chr4 (293-398)||(1519809-1519914)
chr4 (319-398)||(35350147-35350226)
chr4 (319-398)||(39057806-39057885)
chr4 (299-395)||(26425784-26425880)
chr4 (293-398)||(36845407-36845513)
chr4 (299-355)||(26491458-26491514)
chr4 (199-268)||(41348373-41348442)
chr4 (284-384)||(37106254-37106354)
chr4 (199-266)||(3528326-3528393)
chr4 (199-361)||(44499895-44500065)
chr4 (211-266)||(46795951-46796006)
chr4 (199-266)||(49895180-49895247)
chr4 (281-398)||(8363390-8363507)
chr4 (156-266)||(47667314-47667423)
chr4 (199-266)||(29665487-29665554)
chr4 (155-266)||(38554065-38554175)
chr4 (293-361)||(44498495-44498563)
chr4 (285-361)||(56085382-56085458)
chr4 (413-447)||(26631365-26631399)
chr4 (202-267)||(43895533-43895598)
chr4 (213-266)||(56001196-56001249)
chr4 (199-266)||(307713-307785)
chr4 (199-267)||(43418168-43418236)
[»] chr8 (27 HSPs)
chr8 (87-398)||(31844366-31844685)
chr8 (199-398)||(43203190-43203398)
chr8 (293-397)||(43202095-43202199)
chr8 (293-398)||(38697866-38697971)
chr8 (199-355)||(42793740-42793905)
chr8 (293-398)||(28291293-28291398)
chr8 (293-398)||(31845807-31845912)
chr8 (319-398)||(24306164-24306243)
chr8 (166-266)||(38120-38220)
chr8 (293-398)||(9854892-9854997)
chr8 (199-268)||(22621047-22621116)
chr8 (293-361)||(10669458-10669526)
chr8 (286-361)||(10668004-10668079)
chr8 (311-398)||(28291396-28291483)
chr8 (319-372)||(24305077-24305130)
chr8 (293-361)||(20180687-20180755)
chr8 (314-361)||(7844746-7844793)
chr8 (319-370)||(17455073-17455124)
chr8 (199-266)||(24191516-24191582)
chr8 (211-266)||(39516422-39516477)
chr8 (338-396)||(3138918-3138976)
chr8 (318-360)||(19793095-19793137)
chr8 (319-361)||(24191412-24191454)
chr8 (319-361)||(24192702-24192744)
chr8 (199-267)||(21671260-21671328)
chr8 (293-361)||(39174740-39174808)
chr8 (203-267)||(39323922-39323986)
[»] chr7 (22 HSPs)
chr7 (87-395)||(43442562-43442878)
chr7 (281-398)||(10955843-10955960)
chr7 (319-397)||(10957193-10957271)
chr7 (222-398)||(666724-666909)
chr7 (319-398)||(26135639-26135718)
chr7 (293-398)||(669401-669506)
chr7 (293-398)||(2414747-2414848)
chr7 (293-397)||(43441345-43441449)
chr7 (293-361)||(35295734-35295802)
chr7 (199-266)||(17288155-17288222)
chr7 (328-398)||(26146755-26146825)
chr7 (329-398)||(8426935-8427004)
chr7 (293-361)||(44372764-44372832)
chr7 (293-361)||(44381620-44381688)
chr7 (199-266)||(26146617-26146684)
chr7 (211-266)||(28326315-28326370)
chr7 (286-361)||(29589276-29589351)
chr7 (211-266)||(41515132-41515187)
chr7 (319-361)||(48312692-48312734)
chr7 (293-370)||(35296831-35296908)
chr7 (339-368)||(44554825-44554854)
chr7 (199-255)||(44553349-44553405)
[»] chr1 (25 HSPs)
chr1 (105-398)||(48528715-48529015)
chr1 (285-398)||(26287789-26287902)
chr1 (293-395)||(7306268-7306370)
chr1 (222-361)||(12667208-12667356)
chr1 (293-398)||(26286410-26286515)
chr1 (283-398)||(5611724-5611839)
chr1 (319-398)||(48527532-48527611)
chr1 (293-398)||(5613098-5613203)
chr1 (304-398)||(7304810-7304904)
chr1 (293-398)||(12665789-12665894)
chr1 (199-268)||(26803129-26803198)
chr1 (199-268)||(40110565-40110634)
chr1 (165-361)||(40533480-40533685)
chr1 (199-266)||(6048056-6048123)
chr1 (211-268)||(24516468-24516525)
chr1 (199-263)||(5611877-5611941)
chr1 (199-361)||(52076566-52076737)
chr1 (293-362)||(28050355-28050424)
chr1 (281-398)||(14479516-14479633)
chr1 (199-268)||(26287686-26287755)
chr1 (339-368)||(48492757-48492786)
chr1 (285-361)||(6049429-6049505)
chr1 (203-255)||(14171185-14171237)
chr1 (339-395)||(14429752-14429808)
chr1 (199-255)||(48494206-48494262)
[»] chr5 (18 HSPs)
chr5 (203-395)||(10736852-10737053)
chr5 (105-398)||(1103786-1104086)
chr5 (293-398)||(10735761-10735866)
chr5 (201-398)||(4124754-4124961)
chr5 (319-398)||(28702567-28702646)
chr5 (319-398)||(35081476-35081555)
chr5 (293-398)||(11797546-11797651)
chr5 (293-398)||(41144531-41144636)
chr5 (284-398)||(13519471-13519584)
chr5 (293-398)||(35047417-35047522)
chr5 (314-398)||(1102616-1102700)
chr5 (319-398)||(4127292-4127371)
chr5 (199-268)||(8188113-8188182)
chr5 (285-398)||(41143238-41143351)
chr5 (201-268)||(9219313-9219380)
chr5 (203-255)||(38473472-38473524)
chr5 (220-261)||(36898083-36898124)
chr5 (293-361)||(24316199-24316267)
[»] chr3 (16 HSPs)
chr3 (293-398)||(37416451-37416556)
chr3 (293-395)||(37414996-37415098)
chr3 (207-360)||(10301736-10301898)
chr3 (293-361)||(14745213-14745281)
chr3 (199-266)||(53809406-53809473)
chr3 (199-268)||(54750356-54750425)
chr3 (165-266)||(10339869-10339969)
chr3 (199-266)||(48253069-48253136)
chr3 (165-266)||(47766831-47766931)
chr3 (213-266)||(7271518-7271571)
chr3 (332-368)||(40241759-40241795)
chr3 (314-361)||(7270358-7270405)
chr3 (207-257)||(21515408-21515458)
chr3 (201-263)||(45422080-45422142)
chr3 (220-266)||(48084672-48084718)
chr3 (199-267)||(26797454-26797522)
[»] scaffold0219 (2 HSPs)
scaffold0219 (284-398)||(8194-8308)
scaffold0219 (199-398)||(6893-7100)
[»] chr2 (18 HSPs)
chr2 (307-398)||(1309396-1309487)
chr2 (293-398)||(1310681-1310786)
chr2 (319-398)||(1149227-1149306)
chr2 (327-398)||(1147747-1147818)
chr2 (294-361)||(19398814-19398881)
chr2 (207-255)||(25569916-25569964)
chr2 (284-398)||(25559280-25559394)
chr2 (284-370)||(25561663-25561749)
chr2 (345-398)||(8320780-8320833)
chr2 (278-370)||(40556966-40557058)
chr2 (294-361)||(19397565-19397632)
chr2 (293-360)||(23233709-23233776)
chr2 (284-370)||(40559113-40559199)
chr2 (338-398)||(102414-102474)
chr2 (284-398)||(28610020-28610134)
chr2 (106-168)||(16290539-16290597)
chr2 (199-267)||(4513666-4513734)
chr2 (281-353)||(4919870-4919942)
[»] chr6 (14 HSPs)
chr6 (289-397)||(11968486-11968594)
chr6 (319-398)||(30231476-30231555)
chr6 (327-398)||(30232953-30233024)
chr6 (165-268)||(11968345-11968446)
chr6 (319-398)||(136625-136704)
chr6 (327-398)||(138253-138324)
chr6 (327-398)||(146274-146345)
chr6 (199-360)||(18242220-18242390)
chr6 (319-395)||(11967249-11967325)
chr6 (203-255)||(13800177-13800229)
chr6 (202-266)||(18773790-18773854)
chr6 (203-255)||(27438937-27438989)
chr6 (321-398)||(35037131-35037208)
chr6 (293-361)||(21035718-21035786)
[»] scaffold0092 (1 HSPs)
scaffold0092 (327-395)||(39825-39893)
[»] scaffold0003 (1 HSPs)
scaffold0003 (203-255)||(48373-48425)
[»] scaffold0084 (1 HSPs)
scaffold0084 (202-267)||(11841-11906)
[»] scaffold0148 (1 HSPs)
scaffold0148 (338-368)||(15908-15938)
[»] scaffold0141 (1 HSPs)
scaffold0141 (329-395)||(9860-9926)
[»] scaffold0114 (1 HSPs)
scaffold0114 (281-398)||(38538-38655)
[»] scaffold0046 (1 HSPs)
scaffold0046 (202-267)||(24731-24796)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 87 - 398
Target Start/End: Original strand, 26631017 - 26631337
Alignment:
Q  87 agagatgagcgggtttagagagagatctggaataaatgatggtgttgataaagattgattacgttgaagatgatgaacaagaagagagaagatgattaaa 186  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26631017 agagatgagtgggtttagagagagatatggaataaatgatggtgttgatgaagattgattacgttgaagatgatgaacaagaagagagaagatgattaaa 26631116  T
Q  187 agtgnnnnnnnnttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa---------ttaaaggacaa 277  Q
    ||||        ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  26631117 agtgaaaaaaaattaggtgctgatgattcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaaatttagacattaaaggacaa 26631216  T
Q  278 acagaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggg 377  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||    
T  26631217 acggaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgagaccaaaatgaaaataacaaattacttgggg 26631316  T
Q  378 gaccaaaagtccaattaagcc 398  Q
    |||||||||||||||||||||    
T  26631317 gaccaaaagtccaattaagcc 26631337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 87 - 395
Target Start/End: Original strand, 36846359 - 36846674
Alignment:
Q  87 agagatgagcgggtttagagagagatctggaataaatgatggtgttgataaagattgattacgttgaagatgatgaacaagaaga---gagaagatgatt 183  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||   ||||||||||||    
T  36846359 agagatgagtgggtttagagagagatctggaataaatgatggtgttgatgaagattaattatgttgaagatgatgaacaagaagaagagagaagatgatt 36846458  T
Q  184 aaaagtgnnnnnnnnttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa--tta------aaggac 275  Q
    |   |||        ||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||  |||      ||  ||    
T  36846459 a---gtgaaaaata-ttaggtgttgacggttcactgttaaatataatggacatgcaatcaaatggttaaaatcaaatcaaaaaatttagacattaaaaac 36846554  T
Q  276 aaacagaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggg 375  Q
     ||| || |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  36846555 taacggaagggaccaaattgacgaacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttag 36846654  T
Q  376 gggaccaaaagtccaattaa 395  Q
    ||| ||||||||||||||||    
T  36846655 ggggccaaaagtccaattaa 36846674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 281 - 398
Target Start/End: Complemental strand, 35348912 - 35348795
Alignment:
Q  281 gaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggac 380  Q
    |||||||| ||||||||| ||| |||||||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||||   |||||    
T  35348912 gaggggactaaattgactgacgaagcaaaacaagagggactaaaacgttgattttacaagttatgggaccaaaatgaaaacaacaaattacttaagggac 35348813  T
Q  381 caaaagtccaattaagcc 398  Q
    ||||||||||||||||||    
T  35348812 caaaagtccaattaagcc 35348795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 199 - 398
Target Start/End: Complemental strand, 39056631 - 39056423
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaa---------attaaaggacaaacagaggggacc 289  Q
    ||||||||||| ||| |||| |||||  |||| ||||  ||||||| ||||||||||||||||||||         ||||||   | ||| | ||| ||     
T  39056631 ttaggtgttgacggtccactattaaacgcaatggacactcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagctaacggtgggaact 39056532  T
Q  290 aaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtcc 389  Q
    |||||||||||||||||||||||||||| || |||| ||||||||||| | ||||| ||||||||||||||||||||||||||   ||||||||||||||    
T  39056531 aaattgactaacggagcaaaacaagagggactaaaacgttgattttacaaattatgagaccaaaatgaaaacaacaaattacttaagggaccaaaagtcc 39056432  T
Q  390 aattaagcc 398  Q
    |||||||||    
T  39056431 aattaagcc 39056423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 478 - 561
Target Start/End: Original strand, 26631430 - 26631513
Alignment:
Q  478 gaagaggggaaccaaaccaatacctcttcaaatgtcaacaaacctaaaacaagggcttcccagcctgttttgaacataaaaaga 561  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  26631430 gaagaggggaaccaaaccaagacctcttcaaatgttaacaaacctaaaacaaggccttcccagcctgttttgaacataaaaaga 26631513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 284 - 398
Target Start/End: Original strand, 1521198 - 1521312
Alignment:
Q  284 gggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaa 383  Q
    |||||||||||||||||||||| ||||   |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||| |  | |||||||    
T  1521198 gggaccaaattgactaacggagtaaaagttgagggaccaaaatgttgattttacgaattatgggatcaaaatgaaaacaacaaattagttagaggaccaa 1521297  T
Q  384 aagtccaattaagcc 398  Q
    |||||||||||||||    
T  1521298 aagtccaattaagcc 1521312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 26629894 - 26629789
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    |||| ||||||||||||    |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||   |||||||||||||||||    
T  26629894 ttgattaacggagcaaacgttgagggaccaaaatgttgattttatgagttatgggaccaaaatgaaaacaacaatttacttaagggaccaaaagtccaat 26629795  T
Q  393 taagcc 398  Q
    ||||||    
T  26629794 taagcc 26629789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 1519914 - 1519809
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    ||||||||| |||||||    |||| ||||| ||||||||||||||| ||||||||||||||||||||| |||||||| |  ||||||||||||||||||    
T  1519914 ttgactaacagagcaaatgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggaccaaaagtccaat 1519815  T
Q  393 taagcc 398  Q
    ||||||    
T  1519814 taagcc 1519809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 35350147 - 35350226
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||| ||| ||||||||||||||| || |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  35350147 accaaaacgttaattttacgagttatgagatcaaaatgaaaacaacaaattacttaggggaccaaaagtccaattaagcc 35350226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 39057806 - 39057885
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||| ||| |||||||||||||| |||| ||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  39057806 accaaaacgttaattttacgagttataggacaaaaataaaaacaacaaattacttaggggaccaaaagtccaattaagcc 39057885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 299 - 395
Target Start/End: Original strand, 26425784 - 26425880
Alignment:
Q  299 aacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaa 395  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||| | ||||||||||||||   ||||||||  |||||||||||| | ||||||    
T  26425784 aacggagcaaaacaagagagaccaaaatattgattttacgagttattgtaccaaaatgaaaactgaaaattacttaggggaccaaaagactaattaa 26425880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 36845513 - 36845407
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgtt-gattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaa 391  Q
    |||| ||||||||||||    |||||||||||||||| ||||||| ||||||||| || |||||||||||||||| ||||   || ||||||||||||||    
T  36845513 ttgattaacggagcaaacgttgaggaaccaaaatgtttgattttatgagttatggaactaaaatgaaaacaacaatttacctaggtgaccaaaagtccaa 36845414  T
Q  392 ttaagcc 398  Q
    |||||||    
T  36845413 ttaagcc 36845407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 26491514 - 26491458
Alignment:
Q  299 aacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaat 355  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||    
T  26491514 aacggagcaaaataagagggaccaaaatgttgattttacgagttatgagaccaaaat 26491458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 41348442 - 41348373
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaatt 268  Q
    ||||||| ||| ||||||| |||||||||||| ||||||||||||| || ||||||||| ||||||||||    
T  41348442 ttaggtggtgaaggttcaccgttaaatacaatggacatgcaatcaaatgattaaaatcatatcaaaaatt 41348373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 284 - 384
Target Start/End: Original strand, 37106254 - 37106354
Alignment:
Q  284 gggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaa 383  Q
    ||||||| ||||||| |||||||||||  | ||| ||||||  ||||||||||  | ||||||||||||||| |||||||||||||| |  |||||||||    
T  37106254 gggaccatattgactgacggagcaaaagcaaagggaccaaatcgttgattttagaacttatgggaccaaaataaaaacaacaaattagttaggggaccaa 37106353  T
Q  384 a 384  Q
    |    
T  37106354 a 37106354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 3528393 - 3528326
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    ||||||||||| |||||||| ||| ||||||| ||||||||||||| |||||||||||| || |||||    
T  3528393 ttaggtgttgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaa 3528326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 361
Target Start/End: Original strand, 44499895 - 44500065
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaattaaagg---------acaaacagaggggacc 289  Q
    ||||||| ||| |||||||| | | ||||||| |||||||||||||  |||||||||||||||||||| || ||          || ||| ||| ||| |    
T  44499895 ttaggtgctgacggttcactat-agatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaaatatagacattaacaaactaacggagtggatc 44499993  T
Q  290 aaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    || ||||||||||||||||||    ||| ||||||||| |||||||| ||||||||||||||||| ||||||    
T  44499994 aatttgactaacggagcaaaagttaagggaccaaaatgatgattttaagagttatgggaccaaaacgaaaac 44500065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 46795951 - 46796006
Alignment:
Q  211 ggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  46795951 ggttcactattaaatacaatggacatgcaatcaaatggttaaaatcatatcaaaaa 46796006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 49895247 - 49895180
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    |||||||||||||||||||| ||| ||||||  ||| ||||||||| |||||| ||||||||||||||    
T  49895247 ttaggtgttgatggttcactattagatacaacggacctgcaatcaaatggttagaatcaaatcaaaaa 49895180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 398
Target Start/End: Original strand, 8363390 - 8363507
Alignment:
Q  281 gaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggac 380  Q
    ||||||| ||| ||||||||||||||||||| | ||| ||||||||||   |||||| | |||| ||||||||||| ||||    ||||| |  ||||||    
T  8363390 gaggggatcaatttgactaacggagcaaaaccaaagggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggac 8363489  T
Q  381 caaaagtccaattaagcc 398  Q
    |||| |||||||||||||    
T  8363490 caaatgtccaattaagcc 8363507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 266
Target Start/End: Complemental strand, 47667423 - 47667314
Alignment:
Q  156 atgatgaacaagaagagagaagatgattaaaagtgnnnnnnnnttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaat 255  Q
    |||| ||| |||||||||||||||||| |||||||        ||||||| ||| |||||||| ||| ||||||| ||||||||||||| ||||||||||    
T  47667423 atgaggaagaagaagagagaagatgatgaaaagtgaaaaaaa-ttaggtgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaat 47667325  T
Q  256 caaatcaaaaa 266  Q
    || || |||||    
T  47667324 cacataaaaaa 47667314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 29665487 - 29665554
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    |||||| |||| |||||||  ||| ||||||| ||||||||||||| |||||||||||| ||||||||    
T  29665487 ttaggtattgacggttcacaattagatacaatggacatgcaatcaaatggttaaaatcacatcaaaaa 29665554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 38554175 - 38554065
Alignment:
Q  155 gatgatgaacaagaagagagaagatgattaaaagtgnnnnnnnnttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaa 254  Q
    ||||| ||| |||||||||||||||||| |||||||        ||| ||| ||| |||||||| ||||||||||| ||| ||| ||||| |||||||||    
T  38554175 gatgaggaagaagaagagagaagatgatgaaaagtgaaaaaaa-ttaagtgatgacggttcactattaaatacaatggacgtgcgatcaaatggttaaaa 38554077  T
Q  255 tcaaatcaaaaa 266  Q
    ||| ||||||||    
T  38554076 tcatatcaaaaa 38554065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 44498563 - 44498495
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||| |||| ||||||||   |||| ||||||||| |||||||| ||||||||||||||||| ||||||    
T  44498563 ttgaataacagagcaaaagttgagggaccaaaatgatgattttaagagttatgggaccaaaacgaaaac 44498495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 56085458 - 56085382
Alignment:
Q  285 ggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||||||||||| ||||| ||||||    |||| ||||||||| |||||||| || ||||| |||||||||||||||    
T  56085458 ggaccaaattgaataacgaagcaaacattgagggaccaaaatgatgattttaagacttatgagaccaaaatgaaaac 56085382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 447
Target Start/End: Original strand, 26631365 - 26631399
Alignment:
Q  413 agcaagaagctaggacactccctaattcattaact 447  Q
    ||||||||||| |||||||||||||||||||||||    
T  26631365 agcaagaagcttggacactccctaattcattaact 26631399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 43895533 - 43895598
Alignment:
Q  202 ggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaat 267  Q
    ||||||||||||||| ||||  ||||||||| ||||||||  | |||||||||| | |||||||||    
T  43895533 ggtgttgatggttcattgttgtatacaatagtcatgcaattgaatggttaaaattacatcaaaaat 43895598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 56001196 - 56001249
Alignment:
Q  213 ttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    |||||| ||| ||||||| ||||||||||||| |||||||||||| || |||||    
T  56001196 ttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaa 56001249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 307713 - 307785
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaata-----gacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    ||||||| ||| |||||||| ||||||||||||     ||||||||||||  |||||||||||| ||||||||    
T  307713 ttaggtgctgacggttcactattaaatacaatacaatggacatgcaatcatatggttaaaatcatatcaaaaa 307785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 43418236 - 43418168
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaat 267  Q
    |||| ||||| ||||||| ||||  |||| || ||| ||||||||| ||||| ||||||||||||||||    
T  43418236 ttagatgttggtggttcagtgttgtatacgatggacttgcaatcaaatggttgaaatcaaatcaaaaat 43418168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 87 - 398
Target Start/End: Complemental strand, 31844685 - 31844366
Alignment:
Q  87 agagatgagcgggtttagagagagatctggaataaatgatggtgttgataaagattgattacgttgaagatgatgaacaagaagagagaagatgattaaa 186  Q
    ||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31844685 agagatgagtggatttagagagagatatggaataaatgatggtgttgatgaagattgattacgttgaagatgatgaacaagaagatagaagatgattaaa 31844586  T
Q  187 agtgnnnnnnnnttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaatt---------aaaggacaa 277  Q
    ||||        ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||         |||||||||    
T  31844585 agtgaaaaaaa-ttaggtgctgatggttcactgttaattacaatagacatgcaatcaagtggttaaaatcaaatcaaaaattttagaaattaaaggacaa 31844487  T
Q  278 acagaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggg 377  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||   ||    
T  31844486 acggaggggaccaaattgactaacggagcaaaacaagagggaccaaaatgttaattttacgagttacgggactaaaatgaaaacaacaaattactttagg 31844387  T
Q  378 gaccaaaagtccaattaagcc 398  Q
    |||||||||||||||||||||    
T  31844386 gaccaaaagtccaattaagcc 31844366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 199 - 398
Target Start/End: Original strand, 43203190 - 43203398
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa---------ttaaaggacaaacagaggggacc 289  Q
    ||||||| |||| ||||||| ||||||||||| ||||||||||||| || ||||||| ||||||||||         |||||  || ||| |||||||||    
T  43203190 ttaggtgctgatagttcacttttaaatacaatggacatgcaatcaaatgtttaaaattaaatcaaaaaatttagacattaaaaaactaacggaggggacc 43203289  T
Q  290 aaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtcc 389  Q
    ||||||||| ||||||||||| |||||| ||  |||||||||||||||||||||||||||||||||||||| ||||||||| |    |||||||||||||    
T  43203290 aaattgactgacggagcaaaataagagggacggaaatgttgattttacgagttatgggaccaaaatgaaaataacaaattatttaatggaccaaaagtcc 43203389  T
Q  390 aattaagcc 398  Q
    |||||||||    
T  43203390 aattaagcc 43203398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 293 - 397
Target Start/End: Complemental strand, 43202199 - 43202095
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    ||||||||||| |||||    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||    
T  43202199 ttgactaacggtgcaaacgttgagggaccaaaatgttgattttacgagttatgggactaaaatgaaaacaacaaattacttaggggatcaaaagtccaat 43202100  T
Q  393 taagc 397  Q
    |||||    
T  43202099 taagc 43202095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 38697971 - 38697866
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||| |  ||||||||  ||||||||||||  ||||    
T  38697971 ttgactaacggagcaaaacaagagggaccaaaatgttgattttacaagttatggaaccaaaatgtaaatagaaaattacttaggggaccaaaagatcaat 38697872  T
Q  393 taagcc 398  Q
    ||||||    
T  38697871 taagcc 38697866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 199 - 355
Target Start/End: Complemental strand, 42793905 - 42793740
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaa---------attaaaggacaaacagaggggacc 289  Q
    |||||||| ||||||||||| |||| |||||| ||||||||||| | |||||||||||| |||||||         ||||||  |  |||||||||||||    
T  42793905 ttaggtgtcgatggttcactattaattacaatggacatgcaatccaatggttaaaatcatatcaaaagttttagacattaaaaaattaacagaggggacc 42793806  T
Q  290 aaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaat 355  Q
       ||||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  42793805 tttttgactaacggagcaaaacaagagggaccaaaatgttaattttacaatttatgggaccaaaat 42793740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 28291398 - 28291293
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    |||||||||| ||||||| |||||| ||| ||||||||||||||||| |||||||||||||||||||||    |||||||  ||||||||||| ||||||    
T  28291398 ttgactaacgaagcaaaataagagggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttaggggaccaaaaatccaat 28291299  T
Q  393 taagcc 398  Q
    ||||||    
T  28291298 taagcc 28291293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 31845807 - 31845912
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    |||| ||||||||||||    |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||   |||||||||| ||||||    
T  31845807 ttgattaacggagcaaacgttgagggaccaaaatgttgattttatgagttatgggaccaaaatgaaaacaacaatttacttaagggaccaaaactccaat 31845906  T
Q  393 taagcc 398  Q
    ||||||    
T  31845907 taagcc 31845912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 24306164 - 24306243
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||  ||| ||||||||||| ||||||||    
T  24306164 accaaaatattgattttacgagttatgggaccaaaatgaaaacaagaaattacttagggaaccaaaagtcctattaagcc 24306243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 38220 - 38120
Alignment:
Q  166 agaagagagaagatgattaaaagtgnnnnnnnnttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaa 265  Q
    ||||||||||||||||| |||||||        ||||||| ||| |||||||||||||||||||| |||||||||| || |||||||||||| |||||||    
T  38220 agaagagagaagatgatgaaaagtggaaaaaaattaggtgctgacggttcactgttaaatacaatggacatgcaattaaatggttaaaatcatatcaaaa 38121  T
Q  266 a 266  Q
    |    
T  38120 a 38120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 9854892 - 9854997
Alignment:
Q  293 ttgactaacggagcaaaa-caagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaa 391  Q
    |||||| ||||||||||| |||||||| ||||||||| |||||||| | |||||||||||||||| |||||   ||||| |  | |||||||| ||||||    
T  9854892 ttgactgacggagcaaaatcaagagga-ccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaa 9854990  T
Q  392 ttaagcc 398  Q
    |||||||    
T  9854991 ttaagcc 9854997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 22621047 - 22621116
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaatt 268  Q
    ||||||| ||| ||||||| |||||||||||| ||||||||||||| || ||||||||| ||||| ||||    
T  22621047 ttaggtggtgaaggttcaccgttaaatacaatggacatgcaatcaaatgattaaaatcatatcaagaatt 22621116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 10669458 - 10669526
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||| ||||||||||||    |||| |||||||||||||||||| || |||||||||||||||||||||    
T  10669458 ttgaataacggagcaaacgttgaggtaccaaaatgttgattttaagatttatgggaccaaaatgaaaac 10669526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 10668079 - 10668004
Alignment:
Q  286 gaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||||||||||||||| |||||||    |||| ||||||||| ||||||||  | |||||||||||||||||||||    
T  10668079 gaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaatttatgggaccaaaatgaaaac 10668004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 398
Target Start/End: Original strand, 28291396 - 28291483
Alignment:
Q  311 caagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||| |||||||    ||||| |  |||||| |||| ||||||||||||    
T  28291396 caagagggaccgaaatgttaattttacgagttatgggaccaaagtgaaaactgataattatttaggggactaaaaatccaattaagcc 28291483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 24305130 - 24305077
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattact 372  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||  |||||||    
T  24305130 accaaaatgttgattttactagttatagaaccaaaatgaaaacaaggaattact 24305077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 20180687 - 20180755
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||| |||||||||||||   |||| ||||||||| | |||||| |||||||| |||||||||||||||    
T  20180687 ttgaataacggagcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaac 20180755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 7844793 - 7844746
Alignment:
Q  314 gaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||| ||||||||| |||||||| || |||||||||||||||||||||    
T  7844793 gagggaccaaaatgatgattttaagacttatgggaccaaaatgaaaac 7844746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 370
Target Start/End: Complemental strand, 17455124 - 17455073
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaatta 370  Q
    ||||||| ||||||||||| | ||||| ||||||||||||||||| ||||||    
T  17455124 accaaaaagttgattttacaaattatgtgaccaaaatgaaaacaaaaaatta 17455073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 24191582 - 24191516
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    ||||||| ||| |||||||| | | ||||||| |||||||||||||  ||||||||||||||||||||    
T  24191582 ttaggtgctgacggttcactat-agatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaa 24191516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 39516422 - 39516477
Alignment:
Q  211 ggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    |||||||| ||| ||||||| ||||||||||||| |||||||||||| || |||||    
T  39516422 ggttcactattagatacaatggacatgcaatcaaatggttaaaatcacatgaaaaa 39516477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 396
Target Start/End: Original strand, 3138918 - 3138976
Alignment:
Q  338 gagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaag 396  Q
    |||||||| |||||||||||||||||||||| | | | ||||||||| || ||||||||    
T  3138918 gagttatgagaccaaaatgaaaacaacaaataagttgagggaccaaaggttcaattaag 3138976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 19793095 - 19793137
Alignment:
Q  318 aaccaaaatgttgattttacgagttatgggaccaaaatgaaaa 360  Q
    |||| ||||||||||||||||| |||||||| |||||||||||    
T  19793095 aaccgaaatgttgattttacgaattatgggatcaaaatgaaaa 19793137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 24191454 - 24191412
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||    
T  24191454 accaaaatgatgattttaagagttatgggaccaaaacgaaaac 24191412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 24192702 - 24192744
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||    
T  24192702 accaaaatgatgattttaagagttatgggaccaaaacgaaaac 24192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 21671260 - 21671328
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaat 267  Q
    |||||||||| ||| ||| ||||  | ||||||||||||||||||| ||||| |||| | |||||||||    
T  21671260 ttaggtgttggtggctcattgttgtacacaatagacatgcaatcaaatggttgaaattatatcaaaaat 21671328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 39174740 - 39174808
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||| |||||||||||||   |||| ||||||||| ||||||||  | |||| ||||||||||||||||    
T  39174740 ttgaataacggagcaaaagttgagggaccaaaatgatgattttaaaacttataggaccaaaatgaaaac 39174808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 39323986 - 39323922
Alignment:
Q  203 gtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaat 267  Q
    |||||| || |||| ||||  ||||||||||||||||||| | |||||||||| | |||||||||    
T  39323986 gtgttggtgtttcattgttgtatacaatagacatgcaatctaatggttaaaattatatcaaaaat 39323922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 87 - 395
Target Start/End: Original strand, 43442562 - 43442878
Alignment:
Q  87 agagatgagcgggtttagagagagatctggaataaatgatggtgttgataaagattgattacgttgaagatgatgaacaagaaga---gagaagatgatt 183  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||   |||| |||||||    
T  43442562 agagatgagtgggtttagagagagatctggaataaatgatggtgttgatgaagattaattatgttgaagatgatgaacaagaagaagagagaggatgatt 43442661  T
Q  184 aaaagtgnnnnnnnnttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa---------ttaaagga 274  Q
    |   |||        ||||||| ||| |||||||||||||||||||  ||||||||||||| | |||||||||||||||||||         ||||| ||    
T  43442662 a---gtgaaaaaca-ttaggtgctgacggttcactgttaaatacaacggacatgcaatcaaattgttaaaatcaaatcaaaaaatttagacattaaaaga 43442757  T
Q  275 caaacagaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactgg 374  Q
    | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||      
T  43442758 ctaacggaggggaccaaattgactaacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaatatgaaaacaacaaattactta 43442857  T
Q  375 ggggaccaaaagtccaattaa 395  Q
    ||||||||||||| |||||||    
T  43442858 ggggaccaaaagttcaattaa 43442878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 281 - 398
Target Start/End: Complemental strand, 10955960 - 10955843
Alignment:
Q  281 gaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggac 380  Q
    |||||||| |||||||||||||||||||||||||||| || |||| ||||||||||  |||||||| | |||||||||||||||||||||||   |||||    
T  10955960 gaggggactaaattgactaacggagcaaaacaagagggactaaaacgttgattttataagttatggaatcaaaatgaaaacaacaaattacttaagggac 10955861  T
Q  381 caaaagtccaattaagcc 398  Q
    ||||||||||||||||||    
T  10955860 caaaagtccaattaagcc 10955843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 319 - 397
Target Start/End: Original strand, 10957193 - 10957271
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagc 397  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  10957193 accaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggaccaaaagtccaattaagc 10957271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 222 - 398
Target Start/End: Complemental strand, 666909 - 666724
Alignment:
Q  222 aaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa---------ttaaaggacaaacagaggggaccaaattgactaacggagcaaaaca 312  Q
    ||||| |||||||||||||| || |||||||||||||||||||||         |||||  || ||| ||||||||||||||||||||||||||||||||    
T  666909 aaatataatagacatgcaattaaatggttaaaatcaaatcaaaaaatttcgacattaaaatactaacggaggggaccaaattgactaacggagcaaaaca 666810  T
Q  313 agaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||| ||| |||| || |||||| |||||||| || ||||||||||||    ||||| |  |||||| |||| ||||||||||||    
T  666809 agagggaccgaaatattaattttatgagttatgagatcaaaatgaaaactgataattatttaggggactaaaaatccaattaagcc 666724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 26135718 - 26135639
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||| ||||||||||  |||||||||||||||||||||||| ||||||| |  ||||||||||||||||||||||||    
T  26135718 accaaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagtccaattaagcc 26135639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 669401 - 669506
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    ||||| |||| ||||||| || ||| ||| ||||||||||||||||| |||||||||||||||||||||    |||||||  ||||||||||| ||||||    
T  669401 ttgacaaacgaagcaaaataaaagggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttaggggaccaaaaatccaat 669500  T
Q  393 taagcc 398  Q
    ||||||    
T  669501 taagcc 669506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 2414848 - 2414747
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    ||||||||||||||||||| | ||| ||||||| |||| ||||| ||   |||||| |||||||||||||| |||||||| | |||||||||||||||||    
T  2414848 ttgactaacggagcaaaaccaaagggaccaaaacgttggtttta-ga---atgggagcaaaatgaaaacaagaaattacttgagggaccaaaagtccaat 2414753  T
Q  393 taagcc 398  Q
    ||||||    
T  2414752 taagcc 2414747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 397
Target Start/End: Complemental strand, 43441449 - 43441345
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    |||| ||||||||||||    |||| |||||||| || |||||| |||||||| |||||||||||||||||||| |||||  ||||||||||| |||||     
T  43441449 ttgattaacggagcaaacgctgagggaccaaaatattaattttatgagttatgagaccaaaatgaaaacaacaatttacttaggggaccaaaaatccaac 43441350  T
Q  393 taagc 397  Q
    |||||    
T  43441349 taagc 43441345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 35295802 - 35295734
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||| |||| ||||||||||||||| || |||| ||||| |||||||||||||||||||||||| ||||    
T  35295802 ttgattaactgagcaaaacaagagggactaaaacgttgactttacgagttatgggaccaaaatgtaaac 35295734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 17288155 - 17288222
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    ||||||| ||| |||||||| ||||||||||| ||||||||||||| | |||||||||| ||||||||    
T  17288155 ttaggtgctgacggttcactattaaatacaatggacatgcaatcaaatagttaaaatcatatcaaaaa 17288222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 328 - 398
Target Start/End: Original strand, 26146755 - 26146825
Alignment:
Q  328 ttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    |||||||||  | |||| ||| ||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  26146755 ttgattttaaaatttataggatcaaaatgaaaacaacaaattagttaggggaccaaaagtccaattaagcc 26146825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 8426935 - 8427004
Alignment:
Q  329 tgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    |||||||||||| |||  ||||||||||||||||  |||||| |  |||||| |||||||||||||||||    
T  8426935 tgattttacgagctataagaccaaaatgaaaacatgaaattaattaggggactaaaagtccaattaagcc 8427004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 44372832 - 44372764
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||| |||||||||||||   |||| ||||||||| | |||||| |||||||| |||||||||||||||    
T  44372832 ttgaataacggagcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaac 44372764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 44381688 - 44381620
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||| |||||||||||||   |||| ||||||||| | |||||| |||||||| |||||||||||||||    
T  44381688 ttgaataacggagcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaac 44381620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 26146617 - 26146684
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    ||||||| |||  ||||||| |||| |||||| |||||||||||  ||||||||||||| ||||||||    
T  26146617 ttaggtgatgagagttcactattaactacaatggacatgcaatcgggtggttaaaatcatatcaaaaa 26146684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 28326315 - 28326370
Alignment:
Q  211 ggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    |||||||| ||||||| ||| ||||||||||||| |||||||||||| || |||||    
T  28326315 ggttcactattaaatataatggacatgcaatcaaatggttaaaatcatattaaaaa 28326370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 29589276 - 29589351
Alignment:
Q  286 gaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    ||||||||| | |||||||||||||   |||| | ||||||| |||||||| || |||| ||||||||||||||||    
T  29589276 gaccaaattaaataacggagcaaaagttgagggagcaaaatgatgattttaagacttattggaccaaaatgaaaac 29589351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 41515187 - 41515132
Alignment:
Q  211 ggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    |||||||| ||||||| ||| ||||||||||||| |||||||||||| || |||||    
T  41515187 ggttcactattaaatataatggacatgcaatcaaatggttaaaatcatataaaaaa 41515132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 48312692 - 48312734
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    ||||||||| |||||||| || |||||||||||||||||||||    
T  48312692 accaaaatgatgattttaagatttatgggaccaaaatgaaaac 48312734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 35296831 - 35296908
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaatta 370  Q
    ||||||||||||||||||| |  || ||||||||||   |||||| | |||| ||||||||||| |||| ||||||||    
T  35296831 ttgactaacggagcaaaaccaagggtaccaaaatgtgagttttacaatttataggaccaaaatgtaaactacaaatta 35296908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Original strand, 44554825 - 44554854
Alignment:
Q  339 agttatgggaccaaaatgaaaacaacaaat 368  Q
    ||||||||||||||||||||||||||||||    
T  44554825 agttatgggaccaaaatgaaaacaacaaat 44554854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 44553405 - 44553349
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaat 255  Q
    |||||||||||||||||||  ||| | |||||||||| ||||||||  |||||||||    
T  44553405 ttaggtgttgatggttcaccattagaaacaatagacaagcaatcaaacggttaaaat 44553349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 105 - 398
Target Start/End: Original strand, 48528715 - 48529015
Alignment:
Q  105 agagagatctggaataaatgatggtgttgataaagattgattacgttgaagatgatgaacaa---gaagagagaagatgattaaaagtgnnnnnnnntta 201  Q
    ||||||||||||||||||||| |||||| || ||||||    |||||||||| |||||| ||   |||||||||||||||| |||||||        |||    
T  48528715 agagagatctggaataaatgacggtgtt-atgaagatt----acgttgaagaagatgaataaaaagaagagagaagatgatgaaaagtgaaaataa-tta 48528808  T
Q  202 ggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggtt-aaaatcaaatcaaaa---------attaaaggacaaacagaggggaccaa 291  Q
    |||||||| |||||||| ||||||||||| ||||||||||| | ||||| |||||||||||||||         ||||||  || ||| || ||||||||    
T  48528809 ggtgttgacggttcactattaaatacaatggacatgcaatctaatggtttaaaatcaaatcaaaagttttagatattaaaaaactaacggatgggaccaa 48528908  T
Q  292 attgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaa 391  Q
    |||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  48528909 attgactaacggagaaaaataagagggactaaaatgttgattttacgagttatgggaccaaaatgtaaacaacaaattacttgggggaccaaaagtccaa 48529008  T
Q  392 ttaagcc 398  Q
    |||||||    
T  48529009 ttaagcc 48529015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 285 - 398
Target Start/End: Original strand, 26287789 - 26287902
Alignment:
Q  285 ggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaa 384  Q
    ||||||||||||||||||||| ||||   |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |  | ||||||||    
T  26287789 ggaccaaattgactaacggagtaaaagttgagggaccaaaatgttgattttacgaattatgggaccaaaatgaaaacaacaaattagttagaggaccaaa 26287888  T
Q  385 agtccaattaagcc 398  Q
    ||||||||||||||    
T  26287889 agtccaattaagcc 26287902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 293 - 395
Target Start/End: Original strand, 7306268 - 7306370
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    ||||||||| ||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||   || ||||||||||||||    
T  7306268 ttgactaacagaggaaaacaagagggaccaaaatgttaattttacgagttataggaccaaaatgaaaacaacaaattacttaaggaaccaaaagtccaat 7306367  T
Q  393 taa 395  Q
    |||    
T  7306368 taa 7306370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 222 - 361
Target Start/End: Original strand, 12667208 - 12667356
Alignment:
Q  222 aaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa---------ttaaaggacaaacagaggggaccaaattgactaacggagcaaaaca 312  Q
    ||||||||||||||||||||||| || ||||||||||||||||||         |||||  || ||| ||||||||||| ||||||||||||||||||||    
T  12667208 aaatacaatagacatgcaatcaaatgattaaaatcaaatcaaaaaatttcgacattaaaaaactaacggaggggaccaagttgactaacggagcaaaaca 12667307  T
Q  313 agaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    ||||| ||| ||||||| ||||||||| || | ||||||||||||||||    
T  12667308 agagggaccgaaatgttaattttacgaattctaggaccaaaatgaaaac 12667356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 26286515 - 26286410
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    |||||||||||||||||    |||| ||||| ||||||||||||||| ||||||||||||||||||||| |||||||| |  ||||||||||||||||||    
T  26286515 ttgactaacggagcaaacgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggaccaaaagtccaat 26286416  T
Q  393 taagcc 398  Q
    ||||||    
T  26286415 taagcc 26286410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 283 - 398
Target Start/End: Complemental strand, 5611839 - 5611724
Alignment:
Q  283 ggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggacca 382  Q
    |||||||||||| |||||| ||| ||||   |||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| |    ||||||    
T  5611839 ggggaccaaatttactaacagagtaaaagttgaggcaccaaaatgttgattttacaaattatgggaccaaaatgaaaacaacaaattagttaaaggacca 5611740  T
Q  383 aaagtccaattaagcc 398  Q
    ||||||||||||||||    
T  5611739 aaagtccaattaagcc 5611724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 48527611 - 48527532
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||    
T  48527611 accaaaatgttaattttacgagttatgggaccaaaatgtaaacaacaaattacttaggggaccaaaaatccaattaagcc 48527532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 5613098 - 5613203
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    |||||||||||||||||    |||| ||||| ||||||||||||||| ||||||||||||||||||||| |||||||| |  ||||| ||||||||||||    
T  5613098 ttgactaacggagcaaacgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggatcaaaagtccaat 5613197  T
Q  393 taagcc 398  Q
    ||||||    
T  5613198 taagcc 5613203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 7304904 - 7304810
Alignment:
Q  304 agcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||| |||||| |||||||| ||||||||||||||||||||| || |||||||||||||||||| |  ||| ||||| ||||||||||||||    
T  7304904 agcaaaataagagggaccaaaatattgattttacgagttatgggatcacaatgaaaacaacaaattatttcgggaaccaagagtccaattaagcc 7304810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 12665894 - 12665789
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    |||||||||| ||||||| |||||| ||| ||||||||||||||||| ||||||||||||||| |||||    |||||||  ||||||||||| || |||    
T  12665894 ttgactaacgaagcaaaataagagggaccgaaatgttgattttacgaattatgggaccaaaataaaaactgataattacttaggggaccaaaaatcaaat 12665795  T
Q  393 taagcc 398  Q
    ||||||    
T  12665794 taagcc 12665789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 26803129 - 26803198
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaatt 268  Q
    ||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||||    
T  26803129 ttaggtggtgaaggttcactgttaaatacaatggacatgcaatcaaatggttaaaatcatatcaagaatt 26803198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 40110565 - 40110634
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaatt 268  Q
    ||||||| ||| ||||||| |||||||||||| ||||||||||||| |||||||||||| ||||| ||||    
T  40110565 ttaggtggtgaaggttcaccgttaaatacaatggacatgcaatcaaatggttaaaatcatatcaataatt 40110634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 361
Target Start/End: Original strand, 40533480 - 40533685
Alignment:
Q  165 aagaagagagaagatgattaaaagtgnnnnnnnnttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaa 264  Q
    |||||||||||||||||| ||||| |        |||||||  || |||||||| |||| |||||| ||||||||||| | |||||||||||| ||||||    
T  40533480 aagaagagagaagatgatgaaaagcgaaaataaattaggtgccgacggttcactattaattacaatggacatgcaatccaatggttaaaatcatatcaaa 40533579  T
Q  265 a---------attaaaggacaaacagaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaat 355  Q
    |         ||||||  |  ||| |||||||||   ||||||||||||||||| | ||||| |||||||||||| |||||| | |||||| ||||||||    
T  40533580 agttttagacattaaaaaattaacggaggggacctttttgactaacggagcaaagcgagagggaccaaaatgttggttttacaatttatggaaccaaaat 40533679  T
Q  356 gaaaac 361  Q
    | ||||    
T  40533680 gtaaac 40533685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 6048123 - 6048056
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    |||||||||||||||||||| ||| ||||||| ||| | ||||||| |||||| ||||||||||||||    
T  6048123 ttaggtgttgatggttcactattagatacaatggacctccaatcaaatggttagaatcaaatcaaaaa 6048056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 24516525 - 24516468
Alignment:
Q  211 ggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaatt 268  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||||| ||||| ||||    
T  24516525 ggttcaccgttaaatacaatggacatgcaatcaaatggttaaaatcatatcaagaatt 24516468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 5611941 - 5611877
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaa 263  Q
    |||| |||||| |||||||||| ||||||| | ||||| ||||||| ||||||||||||||||||    
T  5611941 ttagatgttgacggttcactgtaaaatacattggacatacaatcaaatggttaaaatcaaatcaa 5611877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 361
Target Start/End: Complemental strand, 52076737 - 52076566
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatc---------aaatcaaaaattaaaggacaaacagaggggacc 289  Q
    ||||||| |||||| ||||| ||| | ||||||||||||||||||| |||||||||||         | || |||||||||| ||| ||| | | |||||    
T  52076737 ttaggtgatgatggctcactattagaaacaatagacatgcaatcaaatggttaaaatcgcatcatgaatattaaaaattaaaagactaacggtgaggacc 52076638  T
Q  290 aaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||| || ||||||||||||    |||| ||||||||| |||||||  || | |||||||||||| ||||||    
T  52076637 aaatcgaataacggagcaaacgttgagggaccaaaatgatgatttttggactaatgggaccaaaacgaaaac 52076566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 28050424 - 28050355
Alignment:
Q  293 ttgactaacggagcaaaa-caagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaaca 362  Q
    |||||||||||||||||| |||| ||| ||||||||| |||||||| | |||||||||||||||| |||||    
T  28050424 ttgactaacggagcaaaatcaagggga-ccaaaatgtggattttacaatttatgggaccaaaatgtaaaca 28050355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 398
Target Start/End: Original strand, 14479516 - 14479633
Alignment:
Q  281 gaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggac 380  Q
    ||||||| ||| |||||| | |||||||||| |  || ||||||||||   |||||| | |||||||||||||||| ||||    ||||| |  ||||||    
T  14479516 gaggggatcaatttgactgatggagcaaaaccaaggggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttaggggac 14479615  T
Q  381 caaaagtccaattaagcc 398  Q
    |||| |||||||||||||    
T  14479616 caaatgtccaattaagcc 14479633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 26287686 - 26287755
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaatt 268  Q
    |||| ||||||  |||||| || ||||||| | ||||| ||||||| ||||||||||||||| |||||||    
T  26287686 ttagatgttgacagttcacggtaaaatacattggacatacaatcaaatggttaaaatcaaataaaaaatt 26287755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Complemental strand, 48492786 - 48492757
Alignment:
Q  339 agttatgggaccaaaatgaaaacaacaaat 368  Q
    ||||||||||||||||||||||||||||||    
T  48492786 agttatgggaccaaaatgaaaacaacaaat 48492757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 6049429 - 6049505
Alignment:
Q  285 ggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||||||||||| ||||| ||||||    |||| ||||||||| |||||||| || ||||| ||||||||| |||||    
T  6049429 ggaccaaattgaataacgtagcaaacgttgagggaccaaaatgatgattttaggacttatgagaccaaaataaaaac 6049505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 14171185 - 14171237
Alignment:
Q  203 gtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaat 255  Q
    |||| ||||||||||| ||| |||  |||||| ||||||||||||||||||||    
T  14171185 gtgtggatggttcactcttatatattatagacctgcaatcaagtggttaaaat 14171237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 14429808 - 14429752
Alignment:
Q  339 agttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaa 395  Q
    ||||||| |||||||||||||||||||||| | |  |||||||||| || |||||||    
T  14429808 agttatgagaccaaaatgaaaacaacaaataagttcggggaccaaaggttcaattaa 14429752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 48494206 - 48494262
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaat 255  Q
    |||||||||||||||||||  ||| | |||||||||| ||||||||  |||||||||    
T  48494206 ttaggtgttgatggttcaccattagaaacaatagacaagcaatcaaacggttaaaat 48494262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 203 - 395
Target Start/End: Original strand, 10736852 - 10737053
Alignment:
Q  203 gtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaattaaaggaca----------aacagaggggaccaaa 292  Q
    ||||||| |||||||| ||| ||||||| ||||| ||||||| |||||||||||||||||||||||  || |||          ||| ||||||||||||    
T  10736852 gtgttgacggttcactattagatacaatggacattcaatcaaatggttaaaatcaaatcaaaaattttag-acattaaaaagttaacggaggggaccaaa 10736950  T
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  10736951 ttgattaacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaagaaattacttaggggaccaaaagtccaat 10737050  T
Q  393 taa 395  Q
    |||    
T  10737051 taa 10737053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 105 - 398
Target Start/End: Original strand, 1103786 - 1104086
Alignment:
Q  105 agagagatctggaataaatgatggtgttgataaagattgattacgttgaagatgatgaacaagaaga---gagaagatgattaaaagtgnnnnnnnntta 201  Q
    ||||||||||||||||||||||||||||||| ||||||    | ||||||||||||||| |||||||   ||||||||||| ||||||         |||    
T  1103786 agagagatctggaataaatgatggtgttgatgaagatt----atgttgaagatgatgaataagaagaagagagaagatgatgaaaagt-aaaaataatta 1103880  T
Q  202 ggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaa---------aaattaaaggacaaacagaggggaccaaa 292  Q
    |||||||| |||| ||| ||||||||||| | |||| |||| | ||||||||||||||||||         | |||| |  || ||| ||||||||||||    
T  1103881 ggtgttgacggttaactattaaatacaatgggcatgtaatctaatggttaaaatcaaatcaatttttttagatattataaaactaacggaggggaccaaa 1103980  T
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
     || ||||| ||| ||||||||||||||  ||||||||||||||||||||||||||| ||||||  ||||||||||||||  ||||||||||||||||||    
T  1103981 ctggctaacagagaaaaacaagaggaactgaaatgttgattttacgagttatgggactaaaatgttaacaacaaattacttaggggaccaaaagtccaat 1104080  T
Q  393 taagcc 398  Q
    ||||||    
T  1104081 taagcc 1104086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 10735866 - 10735761
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||||    
T  10735866 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaagtaattacttaggggaccaaaagtccaat 10735767  T
Q  393 taagcc 398  Q
    ||||||    
T  10735766 taagcc 10735761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 201 - 398
Target Start/End: Complemental strand, 4124961 - 4124754
Alignment:
Q  201 aggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaa---------attaaaggacaaacagaggggaccaa 291  Q
    ||||| ||| |||||||| ||||||||||| || || ||||||| |||||||||| |||||||||         ||||||  || ||   ||||||||||    
T  4124961 aggtgctgacggttcactattaaatacaatggatatacaatcaaatggttaaaattaaatcaaaatttttaaacattaaacaactaatgaaggggaccaa 4124862  T
Q  292 attgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaa-ttactggggggaccaaaagtcca 390  Q
    ||| |||||||||||||||||| ||| ||||||| |||||||||| || |||||| |||||||||||||||| ||| |||||  | ||||||||||||||    
T  4124861 attaactaacggagcaaaacaaaagggaccaaaacgttgattttatgaattatggaaccaaaatgaaaacaagaaatttacttagaggaccaaaagtcca 4124762  T
Q  391 attaagcc 398  Q
    ||||||||    
T  4124761 attaagcc 4124754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 28702646 - 28702567
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||    
T  28702646 accaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggacaaaaagtccaattaagcc 28702567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 35081476 - 35081555
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||||||||||    
T  35081476 accaaaacgttgattttacgagttatgggaccaaaatgaaaacaaacaattacttaggggaccaaaagtccaattaagcc 35081555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 11797546 - 11797651
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||    ||||| |  |||||||||| |||||||    
T  11797546 ttgactaacggagaaaaacaagagggaccaaaatgttgattttacgagttatgagaccaaaatgtaaactcataattatttaggggaccaaatgtccaat 11797645  T
Q  393 taagcc 398  Q
    ||||||    
T  11797646 taagcc 11797651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 41144531 - 41144636
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    ||||||||||||||||||  | ||| ||||||| ||||||||||  | |||||||||||||||||||||||||||||| |  ||||||||||| ||||||    
T  41144531 ttgactaacggagcaaaatcaaagggaccaaaacgttgattttagaatttatgggaccaaaatgaaaacaacaaattaattaggggaccaaaaatccaat 41144630  T
Q  393 taagcc 398  Q
    ||||||    
T  41144631 taagcc 41144636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 398
Target Start/End: Complemental strand, 13519584 - 13519471
Alignment:
Q  284 gggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaa 383  Q
    |||| ||| ||||| ||||||||||||||||| | ||||||||||||||||| ||||||||||||| |||||| |||||| |||||| |   |||| |||    
T  13519584 gggatcaatttgacaaacggagcaaaacaagaaggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattagt-tagggaacaa 13519486  T
Q  384 aagtccaattaagcc 398  Q
    |||||||||||||||    
T  13519485 aagtccaattaagcc 13519471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 35047522 - 35047417
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    ||||||||||||||||||||| ||| ||   || ||||||||||||||||||||||||||||||||||||  |||| |||  ||||| ||||| ||||||    
T  35047522 ttgactaacggagcaaaacaaaagggacttgaacgttgattttacgagttatgggaccaaaatgaaaacacgaaataacttaggggatcaaaaatccaat 35047423  T
Q  393 taagcc 398  Q
    ||||||    
T  35047422 taagcc 35047417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 1102700 - 1102616
Alignment:
Q  314 gaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    |||| ||| |||||||||||||||||||||||||||||| ||| ||||||||||||| |   |||||||||||||||||||||||    
T  1102700 gagggacctaaatgttgattttacgagttatgggaccaatatgtaaacaacaaattagttatgggaccaaaagtccaattaagcc 1102616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 4127292 - 4127371
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||  | |||||||  |||||||||||||    
T  4127292 accaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttagaggaccaagggtccaattaagcc 4127371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 8188113 - 8188182
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaatt 268  Q
    |||||||||||||||||||  ||||||| ||| ||||||||||||| |||||||||||| |||| |||||    
T  8188113 ttaggtgttgatggttcaccattaaatataatggacatgcaatcaaatggttaaaatcatatcagaaatt 8188182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 398
Target Start/End: Complemental strand, 41143351 - 41143238
Alignment:
Q  285 ggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaa 384  Q
    |||||| ||||||| || ||||||||  | ||| ||||||||||||||||||  | ||||| ||||||||| |||||||||||||| |  | ||| |||     
T  41143351 ggaccatattgactgacagagcaaaaacaaagggaccaaaatgttgattttagaacttatgagaccaaaataaaaacaacaaattagttagaggatcaag 41143252  T
Q  385 agtccaattaagcc 398  Q
    ||||||||||||||    
T  41143251 agtccaattaagcc 41143238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 9219380 - 9219313
Alignment:
Q  201 aggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaatt 268  Q
    ||||||||| |||||||| |||||||||||  ||||||||||||  |||||||||||||| |||||||    
T  9219380 aggtgttgaaggttcactattaaatacaatgaacatgcaatcaaacggttaaaatcaaataaaaaatt 9219313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 38473472 - 38473524
Alignment:
Q  203 gtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaat 255  Q
    |||||||||||||||| ||| |||| |||||| ||||||||||||||||||||    
T  38473472 gtgttgatggttcactcttagatactatagacctgcaatcaagtggttaaaat 38473524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 36898124 - 36898083
Alignment:
Q  220 ttaaatacaatagacatgcaatcaagtggttaaaatcaaatc 261  Q
    ||||||||||| ||||||||||||| | ||||||||||||||    
T  36898124 ttaaatacaattgacatgcaatcaaattgttaaaatcaaatc 36898083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 24316199 - 24316267
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||| |||| ||||||||   ||||||||||| ||||||||||  |||||||| ||||||||| |||||    
T  24316199 ttgaataacagagcaaaaattgaggaaccaaagtgttgattttttgagttatgagaccaaaataaaaac 24316267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 37416451 - 37416556
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||  |||||||||||| |||||    
T  37416451 ttgactaacggagcaaaacaagagggaccaaaatgttgattttatgagttatggaaccaaaatgaaaacaacaaattacttaggggaccaaaaggccaat 37416550  T
Q  393 taagcc 398  Q
    ||||||    
T  37416551 taagcc 37416556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 293 - 395
Target Start/End: Complemental strand, 37415098 - 37414996
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||   ||||||||||||| |||    
T  37415098 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgagaccaaaatgaaaataacaaattacttaagggaccaaaagtctaat 37414999  T
Q  393 taa 395  Q
    |||    
T  37414998 taa 37414996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 207 - 360
Target Start/End: Original strand, 10301736 - 10301898
Alignment:
Q  207 tgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaa---------attaaaggacaaacagaggggaccaaattgac 297  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||         ||||||  || ||||||||  |||||||||||    
T  10301736 tgatggttcactgttaaatacaatggacattcaatcaaatggttaaaatcaaatcaaaaaatttagacattaaaaaactaacagaggacaccaaattgac 10301835  T
Q  298 taacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaa 360  Q
    |||||||||||||   || | |||| | || |||||||| || ||||||||||||||||||||    
T  10301836 taacggagcaaaagttgaaggaccatattgatgattttaagacttatgggaccaaaatgaaaa 10301898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 14745213 - 14745281
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    ||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||| ||||    
T  14745213 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggaccaagatgtaaac 14745281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 53809406 - 53809473
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    ||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||| | ||||||||    
T  53809406 ttaggtgctgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaattatatcaaaaa 53809473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 54750356 - 54750425
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaatt 268  Q
    |||| |||||| |||||||||| ||||||| | ||||| ||||||| |||||||||||||||||||||||    
T  54750356 ttagatgttgacggttcactgtaaaatacattggacatacaatcaaatggttaaaatcaaatcaaaaatt 54750425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 10339869 - 10339969
Alignment:
Q  165 aagaagagagaagatgattaaaagtgnnnnnnnnttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaa 264  Q
    |||||||||||||||||| |||||||        ||| ||| ||| |||||||||||||||||||| ||||| ||||||| ||||| |||||||||||||    
T  10339869 aagaagagagaagatgatgaaaagtgaaaaaaa-ttatgtgctgacggttcactgttaaatacaatggacattcaatcaaatggttcaaatcaaatcaaa 10339967  T
Q  265 aa 266  Q
    ||    
T  10339968 aa 10339969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 48253136 - 48253069
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    |||||||||||  ||||||| ||| ||||||| ||||||||||||| |||||||||||| ||||||||    
T  48253136 ttaggtgttgacagttcactattagatacaatggacatgcaatcaaatggttaaaatcacatcaaaaa 48253069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 47766831 - 47766931
Alignment:
Q  165 aagaagagagaagatgattaaaagtgnnnnnnnnttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaa 264  Q
    |||||||||||||||||| |||||||        ||||||| ||| |||||||| ||| ||||||| ||||||||||||| |||||||||||| || |||    
T  47766831 aagaagagagaagatgatcaaaagtgaaaaaaa-ttaggtgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaa 47766929  T
Q  265 aa 266  Q
    ||    
T  47766930 aa 47766931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 7271518 - 7271571
Alignment:
Q  213 ttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    |||||| | ||||||||| ||||||||||||| |||||||||| ||||||||||    
T  7271518 ttcactataaaatacaatggacatgcaatcaaatggttaaaattaaatcaaaaa 7271571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 40241759 - 40241795
Alignment:
Q  332 ttttacgagttatgggaccaaaatgaaaacaacaaat 368  Q
    ||||| |||||||||||||||||||||||||||||||    
T  40241759 ttttaagagttatgggaccaaaatgaaaacaacaaat 40241795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 7270405 - 7270358
Alignment:
Q  314 gaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||| |||||||||||||||||| || ||||||||| |||||||||||    
T  7270405 gagggaccaaaatgttgattttaagacttatgggacaaaaatgaaaac 7270358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 21515458 - 21515408
Alignment:
Q  207 tgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatca 257  Q
    ||||||| |||| ||| ||||||| ||| ||||||||||||||||||||||    
T  21515458 tgatggtgcactattagatacaatggacctgcaatcaagtggttaaaatca 21515408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 45422080 - 45422142
Alignment:
Q  201 aggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaa 263  Q
    |||||||| |||||||| |||  ||||||||||| ||||||||| ||||||| |||| |||||    
T  45422080 aggtgttggtggttcacggtttgatacaatagacctgcaatcaaatggttaatatcatatcaa 45422142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 48084672 - 48084718
Alignment:
Q  220 ttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    ||||||||||| ||||| ||||| | |||||||||||||||||||||    
T  48084672 ttaaatacaatggacattcaatcgaatggttaaaatcaaatcaaaaa 48084718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 26797522 - 26797454
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaat 267  Q
    ||||||||||||||| || ||||  ||||||| ||| ||||||||| ||||| |||| | |||||||||    
T  26797522 ttaggtgttgatggtccattgttgtatacaatggacctgcaatcaaatggttgaaattatatcaaaaat 26797454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 284 - 398
Target Start/End: Original strand, 8194 - 8308
Alignment:
Q  284 gggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaa 383  Q
    |||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||  |||||||  |||||||||    
T  8194 gggatcaaattgactaacggagtaaaacgagagggaccaaaatgttgattttacgagttatgggaccaaaatgtaaacaaagaattacttaggggaccaa 8293  T
Q  384 aagtccaattaagcc 398  Q
    |||| ||||||||||    
T  8294 aagttcaattaagcc 8308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 398
Target Start/End: Complemental strand, 7100 - 6893
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa---------ttaaaggacaaacagaggggacc 289  Q
    ||||||||||| |||||||| ||||||| ||| |||||||||||||  ||||||||| | ||||||||         || ||  || ||| ||||| | |    
T  7100 ttaggtgttgacggttcactattaaatataatggacatgcaatcaaacggttaaaattatatcaaaaaatttagatattgaaaaactaacggaggg-atc 7002  T
Q  290 aaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtcc 389  Q
    || |||||  |||||||||||| | |||||||||||||||| |||||| | |||||||||||||||| |||||   ||||| |  | |||||||| ||||    
T  7001 aatttgaccgacggagcaaaaccaaaggaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtcc 6902  T
Q  390 aattaagcc 398  Q
    |||||||||    
T  6901 aattaagcc 6893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 307 - 398
Target Start/End: Complemental strand, 1309487 - 1309396
Alignment:
Q  307 aaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||||||| ||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  1309487 aaaacaagagggaccaaaatgttaattttacgagttatatgactaaaatgaaaacaacaaattacttaggggaccaaaaatccaattaagcc 1309396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 1310681 - 1310786
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaat 392  Q
    |||||||||| | |||||| ||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||  |||||||   ||||||||    
T  1310681 ttgactaacgaaacaaaacgagagggaccaaaatgttgattttacgagttatgagattaaaatgaaaacaacaaattacttcggggaccttgagtccaat 1310780  T
Q  393 taagcc 398  Q
    ||||||    
T  1310781 taagcc 1310786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 1149227 - 1149306
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  1149227 accaaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaattagttaggggaccaaaagtccaattaagcc 1149306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 1147818 - 1147747
Alignment:
Q  327 gttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||||||  ||||||||||| |||||||||||||||||||| |  ||||||||||||||||||||||||    
T  1147818 gttgattttagaagttatgggactaaaatgaaaacaacaaattagttaggggaccaaaagtccaattaagcc 1147747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 19398814 - 19398881
Alignment:
Q  294 tgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||||||||||||||||||||||| |||||||||| | |||||| | |||||||||||||||| ||||    
T  19398814 tgactaacggagcaaaacaagagggaccaaaatgtaggttttacaatttatgggaccaaaatgtaaac 19398881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 25569964 - 25569916
Alignment:
Q  207 tgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaat 255  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||    
T  25569964 tgatggttcactcttaaatactatagacatgcaatcaagtggttaaaat 25569916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 284 - 398
Target Start/End: Complemental strand, 25559394 - 25559280
Alignment:
Q  284 gggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaa 383  Q
    |||||||  |||||| |||||||||||  | ||| ||||||  ||||||||||  | ||||||||||||||| |||||||||||||| |  |||||||||    
T  25559394 gggaccatcttgactgacggagcaaaagcaaagggaccaaatcgttgattttagaacttatgggaccaaaataaaaacaacaaattagttaggggaccaa 25559295  T
Q  384 aagtccaattaagcc 398  Q
    |  || |||||||||    
T  25559294 atatcgaattaagcc 25559280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 25561663 - 25561749
Alignment:
Q  284 gggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaatta 370  Q
    ||||||| ||||||| | |||||||||  | ||| ||||||  ||||||||||  | ||||||||||||||||||||||||||||||    
T  25561663 gggaccatattgactgatggagcaaaagcaaagggaccaaatcgttgattttagaatttatgggaccaaaatgaaaacaacaaatta 25561749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 8320833 - 8320780
Alignment:
Q  345 gggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    |||||||||||| |||||| ||||||||  ||||||||||||||||||||||||    
T  8320833 gggaccaaaatgtaaacaagaaattacttaggggaccaaaagtccaattaagcc 8320780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 370
Target Start/End: Complemental strand, 40557058 - 40556966
Alignment:
Q  278 acagaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaatta 370  Q
    ||||| ||||||| ||||||| |||| ||||||  | ||| ||||||  ||||||||||  | ||||| ||||||||||||||||||||||||    
T  40557058 acagaagggaccatattgactgacggggcaaaagcaaagggaccaaatcgttgattttagaacttatgagaccaaaatgaaaacaacaaatta 40556966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 19397632 - 19397565
Alignment:
Q  294 tgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||||||||||||||||| ||||| |||||||||||  |||||  | |||||||||||||||| ||||    
T  19397632 tgactaacggagcaaaacgagagggaccaaaatgttagttttaaaatttatgggaccaaaatgtaaac 19397565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 360
Target Start/End: Original strand, 23233709 - 23233776
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaa 360  Q
    |||| |||||||||||||   |||| ||||||||| |||||||| || ||||||||||||||||||||    
T  23233709 ttgaataacggagcaaaagttgagggaccaaaatgatgattttaagacttatgggaccaaaatgaaaa 23233776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 40559113 - 40559199
Alignment:
Q  284 gggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaatta 370  Q
    ||||||| ||||||| |||  ||||||  | ||| |||||| | |||||||||  | ||||||||||||||||||||||||||||||    
T  40559113 gggaccatattgactgacgaggcaaaagcaaagggaccaaattattgattttagaacttatgggaccaaaatgaaaacaacaaatta 40559199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 398
Target Start/End: Original strand, 102414 - 102474
Alignment:
Q  338 gagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    |||||||||||||||||||||||||| |||||| |  |||||||||| |  ||||||||||    
T  102414 gagttatgggaccaaaatgaaaacaagaaattagttaggggaccaaatgatcaattaagcc 102474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 398
Target Start/End: Complemental strand, 28610134 - 28610020
Alignment:
Q  284 gggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaa 383  Q
    |||| ||| |||||| |||||||||||| |  || ||||||||||  ||||||| | |||||||||||||||| ||||    ||||| |  || ||||||    
T  28610134 gggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggtgaccaa 28610035  T
Q  384 aagtccaattaagcc 398  Q
    | |||||||||||||    
T  28610034 atgtccaattaagcc 28610020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 16290539 - 16290597
Alignment:
Q  106 gagagatctggaataaatgatggtgttgataaagattgattacgttgaagatgatgaacaaga 168  Q
    ||||||||||||||||| ||||||| |||| ||    ||||| ||||||||||||||||||||    
T  16290539 gagagatctggaataaaagatggtgctgatgaa----gattatgttgaagatgatgaacaaga 16290597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 4513666 - 4513734
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaat 267  Q
    |||||||||| ||| ||| ||||  | ||||||||||||||||||| ||||| |||| | |||||||||    
T  4513666 ttaggtgttggtggctcattgttgtacacaatagacatgcaatcaaatggttgaaattatatcaaaaat 4513734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 353
Target Start/End: Complemental strand, 4919942 - 4919870
Alignment:
Q  281 gaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaa 353  Q
    ||||||| ||| |||||| |||||||||||| |  || |||||||||| |||||||  | |||||||||||||    
T  4919942 gaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtggattttataatttatgggaccaaa 4919870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 289 - 397
Target Start/End: Original strand, 11968486 - 11968594
Alignment:
Q  289 caaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtc 388  Q
    |||||||||||||  |||||||||| ||| ||||||| ||| |||||||  |||||| |||||||||||||||||||||||| |  ||||||||||| ||    
T  11968486 caaattgactaacaaagcaaaacaaaagggaccaaaacgttaattttacaggttatgagaccaaaatgaaaacaacaaattagttaggggaccaaaaatc 11968585  T
Q  389 caattaagc 397  Q
    |||||||||    
T  11968586 caattaagc 11968594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 30231555 - 30231476
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||    
T  30231555 accaaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaattagttaagggaccaaaagtccaattaagcc 30231476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 327 - 398
Target Start/End: Original strand, 30232953 - 30233024
Alignment:
Q  327 gttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||||||  ||||||||||||||||||||||||||||| || |  ||||||||||||||||||||||||    
T  30232953 gttgattttagaagttatgggaccaaaatgaaaacaacaaactagttaggggaccaaaagtccaattaagcc 30233024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 11968345 - 11968446
Alignment:
Q  165 aagaagagagaagatgattaaaagtgnnnnnnnnttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaa 264  Q
    |||||||||||||||||| |||||||        |||| ||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  11968345 aagaagagagaagatgatgaaaagtgaaaaaaa-ttagatgttgatggttca-tgtaaaatataatagacatgcaatcaaatggttaaaatcaaatcaaa 11968442  T
Q  265 aatt 268  Q
    ||||    
T  11968443 aatt 11968446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 136704 - 136625
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||| ||||||||||  ||||||||||| ||||| |||||||||||||| |  |||||| |||||||||||||||||    
T  136704 accaaaacgttgattttaaaagttatgggactaaaataaaaacaacaaattagttaggggacgaaaagtccaattaagcc 136625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 327 - 398
Target Start/End: Original strand, 138253 - 138324
Alignment:
Q  327 gttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||||||  |||||||||||||||||||||||| ||||||| |  |||||||||||||| |||||||||    
T  138253 gttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagtcaaattaagcc 138324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 327 - 398
Target Start/End: Original strand, 146274 - 146345
Alignment:
Q  327 gttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||||||||  |||||||||||||||||||||||| ||||||| |  |||||||||||||| |||||||||    
T  146274 gttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagtcaaattaagcc 146345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 199 - 360
Target Start/End: Original strand, 18242220 - 18242390
Alignment:
Q  199 ttaggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaa---------attaaaggacaaacagaggggacc 289  Q
    ||||||| |||||||||||| | ||||||||| ||||||||||||| |||||||||| |||| ||||         ||||||  || ||| ||||||||     
T  18242220 ttaggtgatgatggttcactataaaatacaatggacatgcaatcaaatggttaaaattaaattaaaaatttaagacattaaaaaactaacggaggggacg 18242319  T
Q  290 aaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaa 360  Q
    ||||||| ||| |||||||||   |||| |||||| || |||||||| || ||||||||||| ||| ||||    
T  18242320 aaattgaataatggagcaaaagttgagggaccaaattgatgattttaagacttatgggaccagaataaaaa 18242390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 11967325 - 11967249
Alignment:
Q  319 accaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaa 395  Q
    |||||||  ||||||||| ||||||||  ||||||||||||||||||||||| |  ||||||||||||| |||||||    
T  11967325 accaaaacattgattttatgagttatgaaaccaaaatgaaaacaacaaattaattaggggaccaaaagtacaattaa 11967249  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 13800229 - 13800177
Alignment:
Q  203 gtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaat 255  Q
    |||||||||||||||| |||||||| |||||| ||||||||||||||||||||    
T  13800229 gtgttgatggttcactcttaaatactatagacctgcaatcaagtggttaaaat 13800177  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 18773854 - 18773790
Alignment:
Q  202 ggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaa 266  Q
    ||||||| ||||||| ||||  ||||||||||||||||||| | |||||||||||| ||||||||    
T  18773854 ggtgttggtggttcattgttgtatacaatagacatgcaatcgaatggttaaaatcatatcaaaaa 18773790  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 27438989 - 27438937
Alignment:
Q  203 gtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaat 255  Q
    |||||||||||||||| ||| |||| |||||| ||||||||||||||||||||    
T  27438989 gtgttgatggttcactcttagatactatagacctgcaatcaagtggttaaaat 27438937  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 398
Target Start/End: Complemental strand, 35037208 - 35037131
Alignment:
Q  321 caaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaagcc 398  Q
    ||||| |||||||||| |||||||| |||||||||||||||   |||||| |  | |||||||||  |||||||||||    
T  35037208 caaaacgttgattttatgagttatgagaccaaaatgaaaactgaaaattaattagaggaccaaaaaaccaattaagcc 35037131  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 21035718 - 21035786
Alignment:
Q  293 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 361  Q
    |||| |||| ||||||||   ||||||||||| ||||||||||  |||||||| ||||||||| |||||    
T  21035718 ttgaataacagagcaaaaattgaggaaccaaagtgttgattttttgagttatgagaccaaaataaaaac 21035786  T

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Target: scaffold0092 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 39893 - 39825
Alignment:
Q  327 gttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaa 395  Q
    ||||||||||| |||||||||||||||||||||| || ||||||||  |||||||||||||||||||||    
T  39893 gttgattttacaagttatgggaccaaaatgaaaataataaattacttaggggaccaaaagtccaattaa 39825  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 48373 - 48425
Alignment:
Q  203 gtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaat 255  Q
    |||||||||||||||| ||| |||| |||||| ||||||||||||||||||||    
T  48373 gtgttgatggttcactcttagatactatagacctgcaatcaagtggttaaaat 48425  T

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Target: scaffold0084 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 11906 - 11841
Alignment:
Q  202 ggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaat 267  Q
    ||||||| ||||||| ||||  |||||||| |||||||||| | |||||||||||| |||||||||    
T  11906 ggtgttggtggttcattgttgtatacaataaacatgcaatcgaatggttaaaatcacatcaaaaat 11841  T

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Target: scaffold0148 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 368
Target Start/End: Original strand, 15908 - 15938
Alignment:
Q  338 gagttatgggaccaaaatgaaaacaacaaat 368  Q
    |||||||||||||||||||||||||||||||    
T  15908 gagttatgggaccaaaatgaaaacaacaaat 15938  T

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Target: scaffold0141 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 395
Target Start/End: Complemental strand, 9926 - 9860
Alignment:
Q  329 tgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggaccaaaagtccaattaa 395  Q
    |||||||||||| |||| ||||||||||||||||  ||||||    ||||| |||||||||||||||    
T  9926 tgattttacgagctatgagaccaaaatgaaaacacgaaattaaataggggatcaaaagtccaattaa 9860  T

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Target: scaffold0114 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 398
Target Start/End: Complemental strand, 38655 - 38538
Alignment:
Q  281 gaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattactggggggac 380  Q
    ||||||| ||| |||||| |||||| ||||| |  || ||||||||||   |||||| | |||||||||||||||| ||||    ||||| |  ||||||    
T  38655 gaggggatcaatttgactgacggaggaaaaccaaggggaccaaaatgtgagttttacaatttatgggaccaaaatggaaactcataattatttaggggac 38556  T
Q  381 caaaagtccaattaagcc 398  Q
    |||| |||||||||||||    
T  38555 caaatgtccaattaagcc 38538  T

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Target: scaffold0046 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 24731 - 24796
Alignment:
Q  202 ggtgttgatggttcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaat 267  Q
    ||||||| ||||||| ||||  ||||||||||||||||||  | |||||||||||| || ||||||    
T  24731 ggtgttggtggttcattgttgtatacaatagacatgcaattgaatggttaaaatcacataaaaaat 24796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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