View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11169_high_1 (Length: 1036)

Name: NF11169_high_1
Description: NF11169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11169_high_1
NF11169_high_1
[»] chr4 (4 HSPs)
chr4 (357-993)||(24224643-24225284)
chr4 (342-447)||(11096881-11096986)
chr4 (351-436)||(14458638-14458721)
chr4 (321-435)||(24226118-24226232)
[»] chr3 (6 HSPs)
chr3 (18-411)||(22810154-22810544)
chr3 (18-187)||(22835663-22835831)
chr3 (216-303)||(22845949-22846037)
chr3 (18-180)||(22846087-22846248)
chr3 (255-331)||(22835587-22835664)
chr3 (354-396)||(814352-814394)
[»] chr7 (1 HSPs)
chr7 (428-538)||(17927761-17927870)
[»] chr6 (5 HSPs)
chr6 (427-537)||(10740746-10740855)
chr6 (478-555)||(13166651-13166727)
chr6 (425-541)||(9401768-9401883)
chr6 (417-460)||(3950609-3950652)
chr6 (344-441)||(29452364-29452461)
[»] chr2 (1 HSPs)
chr2 (361-428)||(42631524-42631591)
[»] chr5 (1 HSPs)
chr5 (369-435)||(17749814-17749880)
[»] chr8 (1 HSPs)
chr8 (400-501)||(24725780-24725881)


Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 357 - 993
Target Start/End: Original strand, 24224643 - 24225284
Alignment:
Q  357 agttattggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatattgttaacatggtatccaaagcatgattta 456  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  24224643 agttattggtattctatgaaacgctaactgtatttgttagtcactttgttattttatcttattatctatattgttaacatggtattcaaagcatgatcta 24224742  T
Q  457 atcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaatttttaatgttggtcatttgt 556  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24224743 atcctcattgaattgtttatcgctttcgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaatttttaatgttggtcatttat 24224842  T
Q  557 tcggnnnnnnnntttatgattgaagaaaaagcatggttccttccgtcaattgcttggtagaaacaaattagagaaactgggaacgtgatgtttgcttcga 656  Q
    ||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  24224843 tcggaaaaaaaatttatgattgaagaaaaagcatggttccttccgtcaattgcttggtagaaacaaattagagaaattgggaacatgatgtttgcttcga 24224942  T
Q  657 aatggtaatttgcaacattccactaattggtattatttctttggatttttagattcacggtgtgcatattgtttggatggttttgagcacgttttgaaat 756  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24224943 aatggtaatttgcaacattccactaattggtattatttctttggatttttagattcacggtgtgcatattgtttggatggttttgagcacgttttgaaat 24225042  T
Q  757 taattgcatcaatcatcaatattttggattttagagacgtagaagttattctttcaccgtggtatttacttg-----tttctttgatgcttgtcgtcatt 851  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     |||||||||||||||||||||||    
T  24225043 taattgcatcaatcatcaatattttggattttagagacgtagaagttattctttcaccatggtatttacttgtttaatttctttgatgcttgtcgtcatt 24225142  T
Q  852 ggttaatgtttgttcggtttgctccggttgttggttgatatgtatagttttgtcatgttttgggatgtgtatgggtgttcttttcgtttgagtttttgtc 951  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24225143 ggttaatgtttgttcggtctgctccggttgttggttgatatgtatagttttgtcatgttttgggatgtgtatgggtgttctttttgtttgagtttttgtc 24225242  T
Q  952 tttggatcgctcttgttcttggtttatttgtttgaggatgca 993  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24225243 tttggatcgctcttgttcttggtttatttgtttgaggatgca 24225284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 342 - 447
Target Start/End: Original strand, 11096881 - 11096986
Alignment:
Q  342 ctttttgaaatattaagttattggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatattgttaacatggtat 441  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||| ||| |||||| |||||||||| | ||  |||| |||||||||||||||| |||    
T  11096881 ctttttgtaatattaaggtataggtattctatgaaactctaactgtcttttttagtctctttgttattctctccgattagctatattgttaacatgatat 11096980  T
Q  442 ccaaag 447  Q
    | ||||    
T  11096981 ctaaag 11096986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 351 - 436
Target Start/End: Original strand, 14458638 - 14458721
Alignment:
Q  351 atattaagttattggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatattgttaacat 436  Q
    |||||||||||||||  ||||||||||| ||  | || ||||||| ||  ||||||||| | ||| ||||||||||||||||||||    
T  14458638 atattaagttattggatttctatgaaacccttgccgtctttgttaatc--tttgttattctctctaattatctatattgttaacat 14458721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 321 - 435
Target Start/End: Original strand, 24226118 - 24226232
Alignment:
Q  321 tatatatatattctgcattatctttttgaaatattaagttattggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttatta 420  Q
    ||||||||||||||  | || | ||||| ||| ||||  |||||||||||||| |||||||| | || ||| ||| || ||||||||||||  || ||||    
T  24226118 tatatatatattctctaataaccttttgtaatgttaaactattggtattctataaaactctatccgtctttattaatctctttgttattttccctgatta 24226217  T
Q  421 tctatattgttaaca 435  Q
    ||| ||| |||||||    
T  24226218 tctttatcgttaaca 24226232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 22810544 - 22810154
Alignment:
Q  18 gttattgcagataatcggcagaagagttcacaaggagcggttcagaaaaaaccttgcaacaaaactggttgattccaaaagagatttcgcctattctcat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22810544 gttattgcagataatcggcagaagagttcacaaggagcggttcagaaaaaaccttgcaacaaaactggttgattccaaaagagatttcgcctcttctcat 22810445  T
Q  118 agatttgttgaaattatgaatatcgtggatggcttagatagtgatagctcctcttcttgttccgattcatcttttggcgaatttgacttccttcaattgc 217  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22810444 ggatttgttgaaattatgaatatcgtggatggcttagatagtgatagctcctcttctggttccgattcatcttttggcgaatttgacttccttcaattgc 22810345  T
Q  218 aacaagatgatgaaaaccaatgccagctaatcttggaatgaactcttaactaagttgaaccaaggaagtagacttggacatattagtttagagtctatta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22810344 aacaagatgatgaaaaccaatgccagctaatcttggaatgaactcttaactaagttgaaccaaggaagtagacttggacatattagtttagagtctatta 22810245  T
Q  318 gattatatatatattctgcattatctttttgaaatattaagttattggtattctatgaaactctaactgtatttgttagtcactttgttatttt 411  Q
    ||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||   || ||||||||||  |||||||||||    
T  22810244 gattatat--atattctgcattatctttttgaaatattaagctattgatattctatgaaactctagtggtctttgttagtc-ttttgttatttt 22810154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 22835831 - 22835663
Alignment:
Q  18 gttattgcagataatcggcagaagagttcacaaggagcggttcagaaaaaaccttgcaacaaaactggttgattccaaaagagatttcgcctattctcat 117  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||  ||||| |||| ||||||| ||||| |    
T  22835831 gttattgtagataatcggccgaagagttcaccaggagcggttcagaaaaa-ccttgcaacaaaactggttgaacccaaaggagaattcgcctcttctcgt 22835733  T
Q  118 agatttgttgaaattatgaatatcgtggatggcttagatagtgatagctcctcttcttgttccgattcat 187  Q
     |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  22835732 ggatttgctgaaattttgaatatcgtggatggcttagatagtgatagctcctcttccggttccgattcat 22835663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 216 - 303
Target Start/End: Complemental strand, 22846037 - 22845949
Alignment:
Q  216 gcaacaagatgatgaaaaccaatgccagctaatcttggaatgaactcttaactaagttgaaccaagg-aagtagacttggacatattag 303  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||    
T  22846037 gcaacaagaacatgaaaaccaatgccagctaatcttggaatgaactcttaactaagttgaaccgaggtaagtagacatggacatattag 22845949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 22846248 - 22846087
Alignment:
Q  18 gttattgcagataatcggcagaagagttcacaaggagcggttcagaaaaaaccttgcaacaaaactggttgattccaaaagagatttcgcctattctcat 117  Q
    ||||||||||||||||||| ||   |||||   ||||| ||||||||||| |||||||||||||||||||||  |||||| ||| || | || ||||| |    
T  22846248 gttattgcagataatcggctgacatgttcatcgggagctgttcagaaaaa-ccttgcaacaaaactggttgaacccaaaaaagagtttgtctcttctcgt 22846150  T
Q  118 agatttgttgaaattatgaatatcgtggatggcttagatagtgatagctcctcttcttgttcc 180  Q
      |||||||| || |||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  22846149 gaatttgttgcaaatatgaatatcttggatggcttagatagtgatagttcctcttctagttcc 22846087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 22835664 - 22835587
Alignment:
Q  255 atgaactcttaactaagttgaaccaaggaagtagacttggacatattagtttagagtctattagat-tatatatatat 331  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  22835664 atgaactcttaactaagttgaaccaaagaagtagacttggacatattagttttgagtctattatatatatatatatat 22835587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 814394 - 814352
Alignment:
Q  354 ttaagttattggtattctatgaaactctaactgtatttgttag 396  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||    
T  814394 ttaagctattggtattctatgaaactctagctgtctttgttag 814352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 428 - 538
Target Start/End: Complemental strand, 17927870 - 17927761
Alignment:
Q  428 tgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatt 527  Q
    |||||||||||||| || |||||| ||| ||| || || |||||||| | |||||||||||||||||  |||||||||  ||||||||||||||||||||    
T  17927870 tgttaacatggtatacagagcatggtttgatcgtctttaaattgtttgtagcttccgctattgagttttcaaaagttt-gggaatgttgtgtgattgatt 17927772  T
Q  528 tggtttaattt 538  Q
    |||||||||||    
T  17927771 tggtttaattt 17927761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 427 - 537
Target Start/End: Original strand, 10740746 - 10740855
Alignment:
Q  427 ttgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgat 526  Q
    |||||||||||||||| | |||||| ||| |||||| ||||||  | | | ||||||||  ||||||||||||||||||  |||||||||||||||||||    
T  10740746 ttgttaacatggtatcaagagcatggtttgatcctccttgaatgatctgtcgcttccgcagttgagttcccaaaagtttg-ggaatgttgtgtgattgat 10740844  T
Q  527 ttggtttaatt 537  Q
    |||||||||||    
T  10740845 ttggtttaatt 10740855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 478 - 555
Target Start/End: Original strand, 13166651 - 13166727
Alignment:
Q  478 gcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaatttttaatgttggtcatttg 555  Q
    ||||||||| ||| |||||||||| |||  ||||| ||||||||||||||||||||||||| || |||||||| ||||    
T  13166651 gcttccgcttttgtgttcccaaaaatttg-ggaattttgtgtgattgatttggtttaatttatagtgttggtcttttg 13166727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 425 - 541
Target Start/End: Original strand, 9401768 - 9401883
Alignment:
Q  425 tattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattg 524  Q
    |||||||||||||||||| | | | || | | |||||| ||||| | ||| |  |||||| | |||||||||||||| |||  ||||| |||||||||||    
T  9401768 tattgttaacatggtatcgagaacttgttctgatcctccttgaactatttgtctcttccgttgttgagttcccaaaaatttg-ggaatattgtgtgattg 9401866  T
Q  525 atttggtttaattttta 541  Q
    ||||||||| |||||||    
T  9401867 atttggtttgattttta 9401883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 460
Target Start/End: Original strand, 3950609 - 3950652
Alignment:
Q  417 attatctatattgttaacatggtatccaaagcatgatttaatcc 460  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||    
T  3950609 attatctatattgttaacatggtatcgaaagcatggtttgatcc 3950652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 344 - 441
Target Start/End: Complemental strand, 29452461 - 29452364
Alignment:
Q  344 ttttgaaatattaagttattggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatattgttaacatggtat 441  Q
    ||||||||| |||||||||||||||| ||| | || ||| | || ||||||| || || ||||||| |  || |||||||||||||| ||||| ||||    
T  29452461 ttttgaaattttaagttattggtattttataacaccctagccgtttttgttaatctctatgttattctccctgattatctatattgtaaacattgtat 29452364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 361 - 428
Target Start/End: Complemental strand, 42631591 - 42631524
Alignment:
Q  361 attggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatatt 428  Q
    |||| ||||||||||||||||||| || |||||||||| |||||||||| ||||| ||||||||||||    
T  42631591 attgatattctatgaaactctaacagtttttgttagtctctttgttattctatctgattatctatatt 42631524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 17749814 - 17749880
Alignment:
Q  369 tctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatattgttaaca 435  Q
    ||||||||||  |||| || |||||||||| |||| ||||| | ||| |||||||||||||||||||    
T  17749814 tctatgaaaccttaaccgtttttgttagtctctttattattctctctgattatctatattgttaaca 17749880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 400 - 501
Target Start/End: Original strand, 24725780 - 24725881
Alignment:
Q  400 ctttgttattttatcttattatctatattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaa 499  Q
    |||| ||||| ||||| ||||||||| ||||||||||| |||| | ||| | |||| ||| || ||||||  |||||  ||||| ||||||| |||||||    
T  24725780 ctttattattctatctgattatctatgttgttaacatgatatcaagagcctaatttgatcgtccttgaatcatttataacttcctctattgaattcccaa 24725879  T
Q  500 aa 501  Q
    ||    
T  24725880 aa 24725881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University