View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11169_low_2 (Length: 451)

Name: NF11169_low_2
Description: NF11169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11169_low_2
NF11169_low_2
[»] chr5 (5 HSPs)
chr5 (95-440)||(9045318-9045662)
chr5 (16-67)||(30670380-30670431)
chr5 (16-67)||(35468158-35468209)
chr5 (16-64)||(10600234-10600282)
chr5 (19-60)||(11001424-11001465)
[»] chr8 (9 HSPs)
chr8 (67-370)||(26084059-26084363)
chr8 (67-264)||(42935019-42935218)
chr8 (256-440)||(42935929-42936108)
chr8 (95-193)||(26981217-26981317)
chr8 (18-69)||(43041514-43041565)
chr8 (16-69)||(29012468-29012521)
chr8 (16-65)||(10405649-10405698)
chr8 (16-65)||(43326500-43326549)
chr8 (68-132)||(5334427-5334491)
[»] chr6 (3 HSPs)
chr6 (211-440)||(21762349-21762574)
chr6 (16-69)||(27825868-27825921)
chr6 (16-67)||(12188490-12188541)
[»] chr4 (8 HSPs)
chr4 (287-440)||(24258100-24258255)
chr4 (16-68)||(33189261-33189313)
chr4 (16-67)||(43277377-43277428)
chr4 (13-67)||(3473070-3473124)
chr4 (16-67)||(31913971-31914022)
chr4 (16-67)||(50381120-50381171)
chr4 (16-65)||(3513271-3513320)
chr4 (16-69)||(41591207-41591260)
[»] chr7 (8 HSPs)
chr7 (16-66)||(41987923-41987973)
chr7 (16-71)||(30685354-30685409)
chr7 (16-67)||(42561929-42561980)
chr7 (16-65)||(2088245-2088294)
chr7 (16-67)||(37566204-37566255)
chr7 (335-393)||(30061789-30061847)
chr7 (16-67)||(43637291-43637342)
chr7 (16-69)||(36681998-36682051)
[»] chr1 (7 HSPs)
chr1 (16-69)||(39936166-39936219)
chr1 (16-67)||(41318399-41318450)
chr1 (16-67)||(50366271-50366322)
chr1 (16-69)||(32991805-32991858)
chr1 (16-69)||(47819987-47820040)
chr1 (16-67)||(8261633-8261684)
chr1 (25-69)||(11385196-11385240)
[»] chr3 (10 HSPs)
chr3 (16-67)||(13848784-13848835)
chr3 (16-63)||(8319851-8319898)
chr3 (16-70)||(47300403-47300457)
chr3 (16-69)||(1471708-1471761)
chr3 (16-65)||(24695719-24695768)
chr3 (18-70)||(12871569-12871621)
chr3 (16-67)||(31814854-31814905)
chr3 (16-67)||(45365413-45365464)
chr3 (16-65)||(21071064-21071113)
chr3 (16-69)||(40687074-40687127)
[»] chr2 (4 HSPs)
chr2 (16-63)||(42196872-42196919)
chr2 (16-70)||(31526247-31526301)
chr2 (16-69)||(6364738-6364791)
chr2 (27-67)||(7117839-7117879)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 95 - 440
Target Start/End: Original strand, 9045318 - 9045662
Alignment:
Q  95 ataagaaaaatgacatttaatagctacgacactcatttctctatttccaagctgcatattcgtgttctctatgtagcttt--atccactctcttttccat 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| ||||||  ||||||||||||||||||    
T  9045318 ataaggaaaatgacatttaatagctactacactcatttctctgtttccaagctgcatattcgtgttatctatgcagcttttaatccactctcttttccat 9045417  T
Q  193 gtgttatatat--acgtgttttgttaaatttacactccaactttattaatcaaggtcgatgcatgtacatgtatggcatttactacctatctatttccac 290  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     ||| ||||    
T  9045418 gtgttatatatgtacgtgttttgttaaatttacactccaactttatcaatcaaggtcgatgcatgtacatgtatggcatttactacc-----attcccac 9045512  T
Q  291 tccactatctatttccaacatatctcttatatcttccatgtaaattaatatccaccctatttcccatgaatatatgcattgcactacatgctctctatat 390  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||     
T  9045513 tccactatctattcccaacatatctcttatatcttccatgtaaattaatatccaccctattttccatgaatatatgcagtgcactacatgttctctatac 9045612  T
Q  391 atacgtgcgttgttctaagaacttcatttgcatttacccttcacacttca 440  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  9045613 atacgtgtgttgttctaagaacttcatttgcctttacccttcacacttca 9045662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 30670431 - 30670380
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    |||||||||| ||||||||||| ||||||||||| | |||||||||||||||    
T  30670431 tctctcacctctttctctctttacactttcttctgacaaccaaacacaccct 30670380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 35468209 - 35468158
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    ||||||| |||||||||||||||||||||||||| | | |||||||||||||    
T  35468209 tctctcagctatttctctcttttcactttcttctcacacccaaacacaccct 35468158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 10600282 - 10600234
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacac 64  Q
    ||||||||||||||||||||| ||||||||||||   ||||||||||||    
T  10600282 tctctcacctatttctctcttctcactttcttctctcaaccaaacacac 10600234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 11001424 - 11001465
Alignment:
Q  19 ctcacctatttctctcttttcactttcttcttaaaaccaaac 60  Q
    |||||||||||||||||| |||||||||||| | ||||||||    
T  11001424 ctcacctatttctctcttctcactttcttctcacaaccaaac 11001465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 67 - 370
Target Start/End: Original strand, 26084059 - 26084363
Alignment:
Q  67 ttagtctgccgaagcatgtacccaatgtataagaaaaatgacatttaat----agctacgacactcatttctctatttccaagctgcatattcgtgttct 162  Q
    |||||||||||| ||||||||||||   ||||| |||||| ||||||||    |||||| ||||||||||||||  ||||||||||||||||||||||||    
T  26084059 ttagtctgccgatgcatgtacccaagacataaggaaaatggcatttaattaatagctactacactcatttctcttcttccaagctgcatattcgtgttct 26084158  T
Q  163 ctatgtagcttt--atccactctcttttccatgtgttatatatacgtgttttgttaaatttacactccaactttattaatcaaggtcgatgcatgtacat 260  Q
    ||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26084159 ctatgcagcttttaatccactctcatttccatgtgttatatatacgtgttttgttaaatttacactccaactttattaatcaaggtcgatgcatgtacat 26084258  T
Q  261 gtatggcatttactacctatctatttccactccactatctatttccaacatatctcttatatcttccatgtaaattaatatccaccctatttcccatgaa 360  Q
    ||||||||||||||| |      || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26084259 gtatggcatttactatc-----gttcccactccactatctattcccaacatatctcttatatcttccatgtaaattaatatccatcctatttcccatgaa 26084353  T
Q  361 tatatgcatt 370  Q
    ||||||||||    
T  26084354 tatatgcatt 26084363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 67 - 264
Target Start/End: Original strand, 42935019 - 42935218
Alignment:
Q  67 ttagtctgccgaagcatgtacccaatgtataagaaaaatgacatttaatagctacgacactcatttctctatttccaagctgcatattcgtgttctctat 166  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42935019 ttagtctgccgatgcatgtacccaatgcataagaaaaatgacatttaatagctactacactcatttctctatttccaagctgcatattcgtgttctctat 42935118  T
Q  167 gtagcttt--atccactctcttttccatgtgttatatatacgtgttttgttaaatttacactccaactttattaatcaaggtcgatgcatgtacatgtat 264  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42935119 gtagcttttaatccactctcttttccatgtgttatatatacgtgttttgttaaatttacactccaactttattaatcaaggtcgatgcatgtacatgtat 42935218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 256 - 440
Target Start/End: Original strand, 42935929 - 42936108
Alignment:
Q  256 tacatgtatggcatttactacctatctatttccactccactatctatttccaacatatctcttatatcttccatgtaaattaatatccaccctatttccc 355  Q
    ||||||||||||||||||||||     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42935929 tacatgtatggcatttactacc-----attcccactccactatctatttccaacatatctcttatatcttccatgtaaattaatatccaccctatttccc 42936023  T
Q  356 atgaatatatgcattgcactacatgctctctatatatacgtgcgttgttctaagaacttcatttgcatttacccttcacacttca 440  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  42936024 atgaatatatgcattgcactacatgttctctatatatacgcgcgttgttctaagaacttcatttgcatttgcccttcacacttca 42936108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 26981217 - 26981317
Alignment:
Q  95 ataagaaaaatgacatttaatagctacgacactcatttctctatttccaagctgcatattcgtgttctctatgtagcttt--atccactctcttttccat 192  Q
    ||||| |||||||||||||||| || | |||||||||||| | |||||||||||| |||| |||||||||||| | ||||   |||||||||||||||||    
T  26981217 ataaggaaaatgacatttaataacttctacactcatttctttgtttccaagctgcttatttgtgttctctatgcaacttttattccactctcttttccat 26981316  T
Q  193 g 193  Q
    |    
T  26981317 g 26981317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 43041514 - 43041565
Alignment:
Q  18 tctcacctatttctctcttttcactttcttcttaaaaccaaacacaccctta 69  Q
    |||||||||| |||||||| |||||||||||||| |||||||||||||||||    
T  43041514 tctcacctatgtctctcttctcactttcttcttacaaccaaacacaccctta 43041565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 29012521 - 29012468
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccctta 69  Q
    ||||||||||||||||||| |||||  ||||||| | |||||||||||||||||    
T  29012521 tctctcacctatttctctcgtttcaacttcttctcacaaccaaacacaccctta 29012468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 10405698 - 10405649
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacacc 65  Q
    ||||||||||| |||||||||| || |||||||| | |||||||||||||    
T  10405698 tctctcacctaattctctctttacagtttcttctcacaaccaaacacacc 10405649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 43326549 - 43326500
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacacc 65  Q
    |||||| | |||||||||||||||| |||||||| | |||||||||||||    
T  43326549 tctctcccttatttctctcttttcaatttcttctcacaaccaaacacacc 43326500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 5334427 - 5334491
Alignment:
Q  68 tagtctgccgaagcatgtacccaatgtataagaaaaatgacatttaatagctacgacactcattt 132  Q
    ||||||||||| |||||||  ||| | ||||| |||||||||||||||| || | ||||||||||    
T  5334427 tagtctgccgatgcatgtagtcaaggcataaggaaaatgacatttaataacttctacactcattt 5334491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 211 - 440
Target Start/End: Original strand, 21762349 - 21762574
Alignment:
Q  211 ttgttaaatttacactccaa-ctttattaatcaaggtcgatgcatgtacatgtatggcatttactacctatctatttccactccactatctatttccaac 309  Q
    |||||||||||||||| ||| |||||||||| |||| ||||||||||||| ||||| |||||||||||  |||      ||||||||||||||| |||||    
T  21762349 ttgttaaatttacactacaaactttattaattaaggccgatgcatgtacaggtatgacatttactaccattctt-----actccactatctattcccaac 21762443  T
Q  310 atatctcttatatcttccatgtaaattaatatccaccctatttcccatgaatatatgcattgcactacatgctctctatatatacgtgcgttgttctaag 409  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  21762444 atatctcttatatcttccatgtaaattagtatccaccttatttcccaggcatatatgcattgcactacatgttctctatatatacgtgtgttgtgctaag 21762543  T
Q  410 aacttcatttgcatttacccttcacacttca 440  Q
    |||||||||||||||||||||||||||||||    
T  21762544 aacttcatttgcatttacccttcacacttca 21762574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 27825921 - 27825868
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccctta 69  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  27825921 tctctcacctatttctctcttttcactttcttctcaaaatcaaacacaccctta 27825868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 12188490 - 12188541
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    ||||||||||||||||||||| ||| |||||||||  |||||||||||||||    
T  12188490 tctctcacctatttctctcttctcaatttcttctttcaaccaaacacaccct 12188541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 287 - 440
Target Start/End: Original strand, 24258100 - 24258255
Alignment:
Q  287 ccactccactatctatttccaacatatctcttatatcttccatgtaaattaatatccaccctatttcccatgaatatatgcattgcactaca--tgctct 384  Q
    |||| ||| ||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||  | ||||    
T  24258100 ccaccccattatatattcccaacatctctcttatatcttctatgtaaattaatatccaccctatttcccatgcatatatgcactgcactacattttctct 24258199  T
Q  385 ctatatatacgtgcgttgttctaagaacttcatttgcatttacccttcacacttca 440  Q
    || |||||| ||| |||||  ||||||||||||||||||||  |||||||||||||    
T  24258200 ctctatatatgtgtgttgtgttaagaacttcatttgcatttttccttcacacttca 24258255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 33189261 - 33189313
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccctt 68  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  33189261 tctctcacctatttctctcttttcactttcttctcacaaccaaacacaccctt 33189313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 43277428 - 43277377
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    ||||||||||||||||||||| |||||||||||| | |||||||||||||||    
T  43277428 tctctcacctatttctctcttctcactttcttctcacaaccaaacacaccct 43277377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 3473124 - 3473070
Alignment:
Q  13 tcatctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    |||||||||||||||||||||||| ||| |||||||||  |||||||||||||||    
T  3473124 tcatctctcacctatttctctcttctcaatttcttctttcaaccaaacacaccct 3473070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 31913971 - 31914022
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    ||||||||||||||||||||| |||  ||||||| | |||||||||||||||    
T  31913971 tctctcacctatttctctcttctcaacttcttctcacaaccaaacacaccct 31914022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 50381171 - 50381120
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    |||||||||| |||||||||| ||| |||||||| | |||||||||||||||    
T  50381171 tctctcacctctttctctcttctcattttcttctcacaaccaaacacaccct 50381120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 3513271 - 3513320
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacacc 65  Q
    |||||||||| |||||||||| ||| |||||||| | |||||||||||||    
T  3513271 tctctcacctttttctctcttctcattttcttctcacaaccaaacacacc 3513320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 41591207 - 41591260
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccctta 69  Q
    ||||||||||  ||||||||| ||| |||||||| | |||||||||||||||||    
T  41591207 tctctcacctcattctctcttctcattttcttctcacaaccaaacacaccctta 41591260  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 41987973 - 41987923
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccc 66  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  41987973 tctctcacctatttctctcttttcactttcttctcacaaccaaacacaccc 41987923  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 30685354 - 30685409
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacacccttagt 71  Q
    |||||||||| |||||||||| ||| |||||||| |||||||||||||||||||||    
T  30685354 tctctcacctctttctctcttctcattttcttctcaaaaccaaacacacccttagt 30685409  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 42561929 - 42561980
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    ||||||||||||||||||||| |||||||||||| | |||||||||||||||    
T  42561929 tctctcacctatttctctcttctcactttcttctcacaaccaaacacaccct 42561980  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 2088294 - 2088245
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacacc 65  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||||||||    
T  2088294 tctctcaccaatttctctctttacactttcttcttacaaccaaacacacc 2088245  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 37566255 - 37566204
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    ||||||||| |||||||||||  ||||||||||||| |||||||||||||||    
T  37566255 tctctcaccaatttctctcttcacactttcttcttacaaccaaacacaccct 37566204  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 393
Target Start/End: Original strand, 30061789 - 30061847
Alignment:
Q  335 ttaatatccaccctatttcccatgaatatatgcattgcactacatgctctctatatata 393  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||| || |||| ||||    
T  30061789 ttaatacccaccctatttcccatgaatatatacattacactacatgttcactatgtata 30061847  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 43637342 - 43637291
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    ||||||||||| ||||||||| ||| |||||||| | |||||||||||||||    
T  43637342 tctctcacctacttctctcttctcattttcttctcacaaccaaacacaccct 43637291  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 36682051 - 36681998
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccctta 69  Q
    |||||||||| ||| ||||||  ||||||||||| | |||||||||||||||||    
T  36682051 tctctcacctctttatctcttcacactttcttctcacaaccaaacacaccctta 36681998  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 39936219 - 39936166
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccctta 69  Q
    ||||||||||||||||||||| |||||||||||| | |||||||||||||||||    
T  39936219 tctctcacctatttctctcttctcactttcttctcacaaccaaacacaccctta 39936166  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 41318450 - 41318399
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    |||||||||| |||||||||| |||||||||||| | |||||||||||||||    
T  41318450 tctctcacctttttctctcttctcactttcttctcacaaccaaacacaccct 41318399  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 50366271 - 50366322
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    ||||||||||||||||||||| ||||||||||||   |||||||||||||||    
T  50366271 tctctcacctatttctctcttctcactttcttctcgcaaccaaacacaccct 50366322  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 32991805 - 32991858
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccctta 69  Q
    |||||||||| |||||||||| ||| |||||||| | |||||||||||||||||    
T  32991805 tctctcacctgtttctctcttctcattttcttctcacaaccaaacacaccctta 32991858  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 47820040 - 47819987
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccctta 69  Q
    ||||||||||||||||||||| |||||||||||| | ||||||| |||| ||||    
T  47820040 tctctcacctatttctctcttctcactttcttctcacaaccaaatacactctta 47819987  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 8261633 - 8261684
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    ||||||||||||||||||||| | | |||||||| | |||||||||||||||    
T  8261633 tctctcacctatttctctcttcttattttcttctcacaaccaaacacaccct 8261684  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 11385240 - 11385196
Alignment:
Q  25 tatttctctcttttcactttcttcttaaaaccaaacacaccctta 69  Q
    |||| ||||||| |||||||||||| | |||||||||||||||||    
T  11385240 tattcctctcttctcactttcttctcacaaccaaacacaccctta 11385196  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 13848835 - 13848784
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  13848835 tctctcacctatttctctcttttcactttcttctcgcaaccaaacacaccct 13848784  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 8319898 - 8319851
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacaca 63  Q
    ||||||||| |||||||||||||||||||||||| | |||||||||||    
T  8319898 tctctcacccatttctctcttttcactttcttctcacaaccaaacaca 8319851  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 47300403 - 47300457
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacacccttag 70  Q
    |||||||||||||||||||||||||||||||| |   | ||||||||||||||||    
T  47300403 tctctcacctatttctctcttttcactttcttttcgcacccaaacacacccttag 47300457  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 1471708 - 1471761
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccctta 69  Q
    |||||||||| |||||||||| ||| |||||||| | |||||||||||||||||    
T  1471708 tctctcacctctttctctcttctcattttcttctcacaaccaaacacaccctta 1471761  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 24695768 - 24695719
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacacc 65  Q
    ||||||||||| |||||||||| ||||||||||| | |||||||||||||    
T  24695768 tctctcacctaattctctctttacactttcttctcacaaccaaacacacc 24695719  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 12871569 - 12871621
Alignment:
Q  18 tctcacctatttctctcttttcactttcttcttaaaaccaaacacacccttag 70  Q
    |||||||| |||||||||| | |||||||||| | ||||||||||||||||||    
T  12871569 tctcacctctttctctcttcttactttcttctcacaaccaaacacacccttag 12871621  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 31814854 - 31814905
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    |||||||||||||||| |||| ||| |||||||||  |||||||||||||||    
T  31814854 tctctcacctatttctatcttctcaatttcttctttcaaccaaacacaccct 31814905  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 45365464 - 45365413
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    |||||||||||||||  |||| |||||||||||| | |||||||||||||||    
T  45365464 tctctcacctatttccttcttctcactttcttctcacaaccaaacacaccct 45365413  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 21071113 - 21071064
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacacc 65  Q
    |||||||||| |||||||||| ||| |||||||| | |||||||||||||    
T  21071113 tctctcacctttttctctcttctcattttcttctcacaaccaaacacacc 21071064  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 40687074 - 40687127
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccctta 69  Q
    ||||||||||||||||||||| | ||||||| || | |||||||||||| ||||    
T  40687074 tctctcacctatttctctcttcttactttctcctcacaaccaaacacactctta 40687127  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 42196872 - 42196919
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacaca 63  Q
    ||||||||||||||||||||||| |||||||||| | |||||||||||    
T  42196872 tctctcacctatttctctctttttactttcttctcacaaccaaacaca 42196919  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 31526301 - 31526247
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacacccttag 70  Q
    |||||||||| |||||||||| | | |||||||| | ||||||||||||||||||    
T  31526301 tctctcacctttttctctcttctaattttcttctcacaaccaaacacacccttag 31526247  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 6364738 - 6364791
Alignment:
Q  16 tctctcacctatttctctcttttcactttcttcttaaaaccaaacacaccctta 69  Q
    ||||||||||||||||||||| | | ||||||||   |||||||||||||||||    
T  6364738 tctctcacctatttctctcttcttattttcttctcgcaaccaaacacaccctta 6364791  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 7117839 - 7117879
Alignment:
Q  27 tttctctcttttcactttcttcttaaaaccaaacacaccct 67  Q
    ||||||||||  ||||||||||||| |||||||||||||||    
T  7117839 tttctctcttcacactttcttcttacaaccaaacacaccct 7117879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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