View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11169_low_3 (Length: 427)
Name: NF11169_low_3
Description: NF11169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11169_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 422
Target Start/End: Original strand, 11370982 - 11371397
Alignment:
| Q |
9 |
tttggtggattattgtaaactttggtgtgatgttaatttgatttaagtttgtaatatgcagttgagccttgtatatggtccaccatgctgtgccattggg |
108 |
Q |
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| T |
11370982 |
tttggtggattattgtaaactttggtgtgatgttaatttgatttaagtttgtaatatgcagttgatacttgtatatggtccaccatactgtgccactgat |
11371081 |
T |
|
| Q |
109 |
-cttgtatatggttcacggttgggcttttgaagaaaaccacaccgaactggttctgaactaaatcagaagacagatcatgaaaattgaactattttactc |
207 |
Q |
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| T |
11371082 |
acttgtatatggttcacggttgggattttgaagaaaaccacaccgaactggttctgaactaaatcagaagacagatcacgaaaattgaactattttactc |
11371181 |
T |
|
| Q |
208 |
ggtataatttgatttgaacttggtgcactgtggtcatacttatagaagctatgatttttagcttcatgtataatcaaatttta-ggacaaaatcagttat |
306 |
Q |
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| T |
11371182 |
ggtataatttgatctgaacttggtgcactgtggtcagacttatagaagctatgatttttagcttcatgtataatcaaattctagggacaaaatcagttat |
11371281 |
T |
|
| Q |
307 |
gatactctttttatatgaatcaaacatgtcaaaattagtcctacacttctaaaattaatattgccatcatccaaaagtaaaacatatacttagttctacg |
406 |
Q |
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| T |
11371282 |
gatactctttttatatgaatcaaacatgtcaaaattagtcctacacttctaaaattaatattgccatcatccaaaagtaaaacatatacttagttctacg |
11371381 |
T |
|
| Q |
407 |
cttgctctctgcttct |
422 |
Q |
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| T |
11371382 |
cttgctctatgcttct |
11371397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 62 - 422
Target Start/End: Complemental strand, 11356358 - 11355997
Alignment:
| Q |
62 |
atatgcagttgagccttgtatatggtccaccatgctgtgccattgggcttgtatatggttcacggttgggcttttgaagaaaaccacaccgaactggttc |
161 |
Q |
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| T |
11356358 |
atatgcagttgatacttgtatatggtccaccatgctgtgccactgggcttttatatggttcacggttgggcttttgaagaaaaccacaccgaactggttc |
11356259 |
T |
|
| Q |
162 |
tgaactaaatcagaagacagatcatgaaaattgaactattttactcggtataatttgatttgaacttggtgcactgtggtcatacttatagaagctatga |
261 |
Q |
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| T |
11356258 |
tgaactaaatcagaagacagatcacgaaaattgaactattttactcggtataatttgatctgaacttggtgcactgtggtcagacttatagaagctatga |
11356159 |
T |
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| Q |
262 |
tttttagcttcatgtataatcaaatttta-ggacaaaatcagttatgatactctttttatatgaatcaaacatgtcaaaattagtcctacacttctaaaa |
360 |
Q |
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| T |
11356158 |
tttttagcttcatgtataatcaaattctagggacaaaatcagttatgatactctttttatatgaatcaaacatgtcaaaattagtcctacacttctaaaa |
11356059 |
T |
|
| Q |
361 |
ttaatattgccatcatccaaaagtaaaacatatacttagttctacgcttgctctctgcttct |
422 |
Q |
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| T |
11356058 |
ttaatattgccatcatccaaaagtaaaacatatacttagttctacgcttgctctatgcttct |
11355997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 36529472 - 36529431
Alignment:
| Q |
324 |
aatcaaacatgtcaaaattagtcctacacttctaaaattaat |
365 |
Q |
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| T |
36529472 |
aatcaaacatgtcaaaattaattctacatttctaaaattaat |
36529431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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