View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1116_high_12 (Length: 265)
Name: NF1116_high_12
Description: NF1116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1116_high_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 29 - 265
Target Start/End: Complemental strand, 35672219 - 35671983
Alignment:
| Q |
29 |
agcttcctctttagctcatccattaaatttctttgctccttgctccacaaaactttcctctgaaaaataacagtttgttcaatgttgtcaatcgcaggtt |
128 |
Q |
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| T |
35672219 |
agcttcctctttagctcatccattaaatttctttgctccttgctccacaaaactttcctctgaaaaataacggtttgttcaatgttgtcaatcgcaggtt |
35672120 |
T |
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| Q |
129 |
acagaaaataacaatttgttcaaatttcattacactatcgcgcaactatttaacaacttcaattatataccttgtgcttcagaagacttgataaactctt |
228 |
Q |
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| T |
35672119 |
acagaaaataacaatttgttcaaatttcattacactatcgcgcaactatttaacaacttcaattatataccttgtgcttcagaagacttgataaactctt |
35672020 |
T |
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| Q |
229 |
caagctgagcttcaatcgaaatatcttcatccgcatc |
265 |
Q |
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| T |
35672019 |
caagctgagcttcaatcgaaatatcttcatccgcatc |
35671983 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 25207416 - 25207464
Alignment:
| Q |
106 |
ttcaatgttgtcaatcgcaggttacagaaaataacaatttgttcaaatt |
154 |
Q |
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| T |
25207416 |
ttcaatgttgtcgatcgcagattgcggaaaataacagtttgttcaaatt |
25207464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 9634864 - 9634912
Alignment:
| Q |
106 |
ttcaatgttgtcaatcgcaggttacagaaaataacaatttgttcaaatt |
154 |
Q |
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| T |
9634864 |
ttcaatgttgtcaattgcagattacagaaaatagcggtttgttcaaatt |
9634912 |
T |
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