View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1116_high_16 (Length: 229)
Name: NF1116_high_16
Description: NF1116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1116_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 32769750 - 32769642
Alignment:
| Q |
102 |
atcaatctaactaatcatttccttaatagttgtataactgtaaaagagacaattaaaatgagaaagacatagtattgtagattcgaacatacgttacgac |
201 |
Q |
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| T |
32769750 |
atcaatctaactaatcatttccttaaaagttgtttaactgtaaaagagacaattaaaatgagaaagacatagtattgtagattcgaacatacgttacgac |
32769651 |
T |
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| Q |
202 |
aaatgaaat |
210 |
Q |
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||||||||| |
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| T |
32769650 |
aaatgaaat |
32769642 |
T |
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Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 15250287 - 15250190
Alignment:
| Q |
9 |
accacagaatccaccaggtcccccaaacaacacaacacgttgcaaatcatcacgtaaattatcaacgtaatttgcatcataacaaagaggtttatcaa |
106 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15250287 |
accacagaatccaccaggtccaccaaacaacacaacacgttgcaaatcatcacgtaaattatcaacgtaatttgcatcataacaaagaggtttatcaa |
15250190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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