View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1116_high_3 (Length: 423)
Name: NF1116_high_3
Description: NF1116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1116_high_3 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 46 - 423
Target Start/End: Original strand, 39210778 - 39211156
Alignment:
| Q |
46 |
gctaagaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatc |
145 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39210778 |
gctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatc |
39210877 |
T |
|
| Q |
146 |
aatttaagcagtatttctagaagaattagtaata---ttaattatgccgcttcatattttttgttttcaaagcattatagagttggttctattctgagtt |
242 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39210878 |
aatttaagcagtatttctggaagaattagtaatagtattaattatgccacttcatattttt-gttttcaaagcattatagagt-ggttctattctgagtt |
39210975 |
T |
|
| Q |
243 |
gagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatttactcttattatttgcctt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39210976 |
gagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaattaacaaattgtgagatgtactcttattatttgcctt |
39211075 |
T |
|
| Q |
343 |
gtgtactttctgctaccaagttgggtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatgctatc |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39211076 |
gtgtactttctgctaccaagttgggtattgaggaaatattatcattatctttggtatgagtatagtctttgatatgctatc |
39211156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 46 - 420
Target Start/End: Complemental strand, 27510155 - 27509785
Alignment:
| Q |
46 |
gctaagaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatc |
145 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27510155 |
gctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatc |
27510056 |
T |
|
| Q |
146 |
aatttaagcagtatttctagaagaattagtaatattaattatgccgcttcatattttttgttttcaaagcattatagagttggttctattctgagttgag |
245 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27510055 |
aatttaagcagtatttctggaagaattagtaatattaattatgcggcttcatattttt-gttttcaaagcattatagagt-ggttctattctgagttgag |
27509958 |
T |
|
| Q |
246 |
aaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatttactcttattatttgccttgtg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27509957 |
aaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatgtactcttattatttgccttgtg |
27509858 |
T |
|
| Q |
346 |
tactttctgctaccaagttgggtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatgct |
420 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
27509857 |
tactttctgctacgaagttgggtattaaggaaatactatcattatctttggtatgag--tagtctttgatatgct |
27509785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 53 - 423
Target Start/End: Original strand, 27271258 - 27271624
Alignment:
| Q |
53 |
atagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaa |
152 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
27271258 |
atagggttgtctatcattgtgcgcctccaatgttggtgttgagaacaaaaatgcctccatcagcaagcactggaggaaatggtccatcttatcaatttaa |
27271357 |
T |
|
| Q |
153 |
gcagtatttctagaagaattagtaatattaattatgccgcttcatattttttgttttcaaagcattatagagttggttctattctgagttgagaaatgta |
252 |
Q |
| |
|
||| ||||||| |||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
27271358 |
gcactatttctggaagaattagtaatattaatcatgtcgctttatattttt-gttttcaaagcattagag---tggttctattctgagttgagaaatgta |
27271453 |
T |
|
| Q |
253 |
ctcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatttactcttattatttgccttgtgtactttc |
352 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
27271454 |
ctctattggttgtgtgtactttttagcactttagtgatttgatgattaagtaatcaacaaattgtgagatgtactcttattagttgccttatgtactttc |
27271553 |
T |
|
| Q |
353 |
tgctaccaagttgggtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatgctatc |
423 |
Q |
| |
|
|||| ||||||| || ||| |||||| |||||||||||||| ||||| ||||||||||| |||||| |||| |
|
|
| T |
27271554 |
tgctgccaagttcggcattaaggaaaaattatcattatctttggtataagtatagtcttcgatatgttatc |
27271624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 64 - 423
Target Start/End: Complemental strand, 29707587 - 29707232
Alignment:
| Q |
64 |
tatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttct |
163 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29707587 |
tatcattgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcactggaggaaatggtccatcttatcaatttaagtagtatttct |
29707488 |
T |
|
| Q |
164 |
agaagaattagtaatattaattatgccgcttcatattttttgttttcaaagcattatagagttggttctattctgagttgagaaatgtactcttttggtt |
263 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29707487 |
tgaagaattagtaatattaatcatgtcgctttatattttt-gttttcaaagcattagag---tggttctattctgagttgagaaatgtactctattggtt |
29707392 |
T |
|
| Q |
264 |
gtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatttactcttattatttgccttgtgtactttctgctaccaagt |
363 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
29707391 |
gtgtgtactttttagcactttagtgatttgatgattaagtaatcaacaaattgtgagatgtactcttattagttgccttatgtactttctgctaccaagt |
29707292 |
T |
|
| Q |
364 |
tgggtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatgctatc |
423 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||||| ||||||||||| |||||| |||| |
|
|
| T |
29707291 |
tgggtattaaggaaaaattatcattatctttggtataagtatagtcttcgatatgttatc |
29707232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 237 - 423
Target Start/End: Complemental strand, 42093510 - 42093321
Alignment:
| Q |
237 |
tgagttgagaaatgtactcttttggttgtgtgtactttttaccactttagtgatttgatgataaagtaatcaacaaattgtgagatttactcttattatt |
336 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||| | || |||||| | |
|
|
| T |
42093510 |
tgagttgagaaatgtactgttttggttagttgtacttttaagcacttaagtgatttgatgattaagtaatcaacaaattgtgagatgtccttttattagt |
42093411 |
T |
|
| Q |
337 |
tgccttgtgtac-tttctgctaccaa----gttgggtattgaggaaatattatcattatcttcggtatgagtatagtctttgatatgctatc |
423 |
Q |
| |
|
|||||| ||||| ||||||||||||| |||||||||| |||||| |||||||||||||| |||| || ||||||||||||||||||| |
|
|
| T |
42093410 |
tgccttatgtacttttctgctaccaagttggttgggtattaaggaaaaattatcattatctttggtagaag--tagtctttgatatgctatc |
42093321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 31949765 - 31949887
Alignment:
| Q |
52 |
aatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaattta |
151 |
Q |
| |
|
|||| |||||| ||||| ||||| ||||||||||||||| ||| |||||| ||||||||||| | ||||||| ||||||||||| ||||||| |||| |
|
|
| T |
31949765 |
aataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatctataggcattggtgaaaatggtccgtcttatcgatttg |
31949864 |
T |
|
| Q |
152 |
agcagtatttctagaagaattag |
174 |
Q |
| |
|
||||| ||||| ||||||||| |
|
|
| T |
31949865 |
agcagcttttctgaaagaattag |
31949887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 42492385 - 42492422
Alignment:
| Q |
7 |
acaagcattataagaaggatgcttatgttctgtggtgc |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42492385 |
acaagcattataagaaggatgcttatgttctgtggtgc |
42492422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University