View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1116_high_5 (Length: 395)

Name: NF1116_high_5
Description: NF1116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1116_high_5
NF1116_high_5
[»] chr7 (3 HSPs)
chr7 (9-355)||(38041304-38041652)
chr7 (90-158)||(2767504-2767572)
chr7 (107-158)||(24250542-24250593)
[»] chr6 (2 HSPs)
chr6 (227-355)||(31837644-31837773)
chr6 (118-158)||(28867154-28867194)
[»] chr3 (2 HSPs)
chr3 (352-389)||(42492385-42492422)
chr3 (69-158)||(48897730-48897819)
[»] chr5 (2 HSPs)
chr5 (81-156)||(43579012-43579087)
chr5 (81-155)||(43590976-43591050)
[»] scaffold0122 (1 HSPs)
scaffold0122 (116-158)||(18603-18645)
[»] chr8 (1 HSPs)
chr8 (117-163)||(24068214-24068260)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 355
Target Start/End: Complemental strand, 38041652 - 38041304
Alignment:
Q  9 caagaatatttaacgatggtataatttttacacaacattctttaat--tatatccatcaactcattgattttcagccaataataaatctaagtggttgaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38041652 caagaatatttaacgatggtataatttttacacaacattctttaatattatatccatcaactcattgattttcagccaataacaaatctaagtggttgaa 38041553  T
Q  107 atctttttgtgatcaattcttgatataatctctttagataattagcaatgcttgttttgtttactctctttatcgattatttccatatccttggattttt 206  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38041552 atcttttcgcgatcaattcttgatataatctctttagataattagcaatgcttgttttgtttactctctttatcgattatttccatatccttggattttt 38041453  T
Q  207 attttctttctaaatatcgcattaatcctccacatacacatttacatgtatttcaacaatacactaagttataatttgtatctttaaaatttggaatttc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38041452 attttctttctaaatatcgcattaatcctccacatacacatttacatgtatttcaacaatacactaagttataatttgtatctttaaaatttggaatttc 38041353  T
Q  307 tgttaaatattccaacagaatctagtccatctgttcttcgaagcagcac 355  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38041352 tgttaaatattccaacagaatcaagtccatctgttcttcgaagcagcac 38041304  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 2767572 - 2767504
Alignment:
Q  90 aaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaatgct 158  Q
    |||| ||| ||||||||||| || ||||||| |||||||||||||||||| || |||| ||||||||||    
T  2767572 aaatttaattggttgaaatcattctgtgatccattcttgatataatctctctatataaatagcaatgct 2767504  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 24250542 - 24250593
Alignment:
Q  107 atctttttgtgatcaattcttgatataatctctttagataattagcaatgct 158  Q
    |||||||  |||||||||||||||| ||||||||||||||  ||||||||||    
T  24250542 atcttttcttgatcaattcttgataaaatctctttagatagatagcaatgct 24250593  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 227 - 355
Target Start/End: Complemental strand, 31837773 - 31837644
Alignment:
Q  227 attaatcctccacatacacat--ttacatgtatttcaacaatacactaagttataatttgtatctttaaaatttggaatttctgttaaatattccaacag 324  Q
    |||||||||||| ||||| ||  ||||||||||||||| ||||||||| |||||||||||||| | | |||||||| ||||| ||||||||||||| |||    
T  31837773 attaatcctccatatacatatatttacatgtatttcaagaatacactatgttataatttgtatatatgaaatttgggatttcagttaaatattccagcag 31837674  T
Q  325 aatctagtccatctgttcttcgaagcagcac 355  Q
    ||  |||||||  |||||||||||| |||||    
T  31837673 aacttagtcca-gtgttcttcgaagtagcac 31837644  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 28867194 - 28867154
Alignment:
Q  118 atcaattcttgatataatctctttagataattagcaatgct 158  Q
    |||||||||||||| ||||||||||||||| || |||||||    
T  28867194 atcaattcttgataaaatctctttagataaataacaatgct 28867154  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 352 - 389
Target Start/End: Complemental strand, 42492422 - 42492385
Alignment:
Q  352 gcaccacagaacataagcatccttcttataatgcttgt 389  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42492422 gcaccacagaacataagcatccttcttataatgcttgt 42492385  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 48897730 - 48897819
Alignment:
Q  69 cattgattttcagccaataataaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaatgct 158  Q
    |||||||||||  | ||||| |||| ||| | | |||||  ||||| |||| ||||||||||| ||||||| ||||||| ||||||||||    
T  48897730 cattgattttcgacaaataacaaatttaacttgctgaaacatttttttgattaattcttgataaaatctctctagataaatagcaatgct 48897819  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 43579012 - 43579087
Alignment:
Q  81 gccaataataaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaatg 156  Q
    |||||||| |||  ||| ||| || |||||||| ||||||||||||||||||||| ||  ||||||| ||||||||    
T  43579012 gccaataagaaaattaattggctggaatcttttcgtgatcaattcttgatataatatcgctagataaatagcaatg 43579087  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 43591050 - 43590976
Alignment:
Q  81 gccaataataaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaat 155  Q
    |||||||| ||| |||| ||| || |||||||| ||||||||||||| ||||||||||   |||||| |||||||    
T  43591050 gccaataagaaaactaattggctggaatcttttcgtgatcaattcttaatataatctcgcaagataaatagcaat 43590976  T

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Target: scaffold0122 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 18645 - 18603
Alignment:
Q  116 tgatcaattcttgatataatctctttagataattagcaatgct 158  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||    
T  18645 tgatcaattcttaataaaatctctttagataaatagcaatgct 18603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 24068214 - 24068260
Alignment:
Q  117 gatcaattcttgatataatctctttagataattagcaatgcttgttt 163  Q
    ||||||||||||||| ||||||| ||||||| |||||||||| ||||    
T  24068214 gatcaattcttgataaaatctctctagataaatagcaatgctcgttt 24068260  T

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