View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1116_high_8 (Length: 312)
Name: NF1116_high_8
Description: NF1116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1116_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 22 - 302
Target Start/End: Original strand, 26966961 - 26967241
Alignment:
| Q |
22 |
aggatgcttatgactacctttgtaaactatctcagtaatttgtccatctaaacccctctcaacttttttctttgttggacaattagggtaagtgcattta |
121 |
Q |
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| T |
26966961 |
aggatgattatgactacctttgtaaactatctcagtaatttgtccatctaaacccctctcaacttttttctttgttggacaattagggtaagtgcattta |
26967060 |
T |
|
| Q |
122 |
taataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctgatcttctactaaggatctgaacttgtg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26967061 |
taataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctgatcttctactaaggatctgaacttgtg |
26967160 |
T |
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| Q |
222 |
gctgtgattgataattgttgtaatttgattgtgaaccactcttgttgtagttattttgttcactagtagaattactctctg |
302 |
Q |
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| T |
26967161 |
gttgtgattgataattgttgtaatttgattgtgaaccactcttgttgtagttattttgttcactagtagaattactctctg |
26967241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 31615261 - 31615439
Alignment:
| Q |
22 |
aggatgcttatgactacctttgtaaactatctcagtaatttgtccatctaaacccctctcaacttttttctttgttggacaattagggtaagtgcattta |
121 |
Q |
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|||||| |||||| |||| || |||||||||||||||| |||||| || | ||||||||||| |||||||| ||||| |||||||| |||||||| |
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| T |
31615261 |
aggatgattatgagtacccttataaactatctcagtaacttgtccctcaattgatctctcaactttcttctttgtaggacagttagggtatgtgcatttg |
31615360 |
T |
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| Q |
122 |
taataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctgatcttc |
200 |
Q |
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| T |
31615361 |
tagtaacttctcggattttcacttcccttaacttgcttttgtccatattttcgccaattgtatccatcatcggatcttc |
31615439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 41271300 - 41271244
Alignment:
| Q |
140 |
tcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctgat |
196 |
Q |
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||||| ||||| || |||||||| ||||| |||| ||||||||||||||||| |||| |
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| T |
41271300 |
tcactccctttaacatgtttttgcccatactttcgccaattgtatccatcatttgat |
41271244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 3669364 - 3669194
Alignment:
| Q |
22 |
aggatgcttatgactacctttgtaaactatctcagtaatttgtccatct---aaacccctctcaacttttttctttgttggacaattagggtaagtgcat |
118 |
Q |
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| T |
3669364 |
aggatggttatgacttcctttatatactatttgagtaatttgtccatcatccaaagacctttcaactttcttcttcattgagcaaattggattagtgcac |
3669265 |
T |
|
| Q |
119 |
ttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatc |
189 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |
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| T |
3669264 |
ttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatccatc |
3669194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 198
Target Start/End: Original strand, 26332483 - 26332628
Alignment:
| Q |
53 |
tcagtaatttgtccatctaaacccctctcaacttttttctttgttggacaattagggtaagtgcatttataataacttcttggattttcacttcctttca |
152 |
Q |
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|||||||| |||||||| ||| ||||||| ||||| ||||| ||| ||||| || | ||||| || |||||||| | |||||||| |||||||||| |
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| T |
26332483 |
tcagtaatctgtccatccaaatccctctcgactttcttcttcattgagcaatttggattcgtgcacttgtaataactacgcggattttcgcttcctttca |
26332582 |
T |
|
| Q |
153 |
cttgtttttgtccatattttctccaattgtatccatcatctgatct |
198 |
Q |
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||||||| ||||||||||||||||||||||| ||||| || ||||| |
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| T |
26332583 |
cttgtttctgtccatattttctccaattgtaaccatcttccgatct |
26332628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 40471422 - 40471516
Alignment:
| Q |
97 |
tggacaattagggtaagtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcat |
191 |
Q |
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| T |
40471422 |
tggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcat |
40471516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 30409086 - 30409182
Alignment:
| Q |
99 |
gacaattagggtaagtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctga |
195 |
Q |
| |
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||||||||| | ||| ||||| || || ||||| |||| |||||| ||||| ||||||||||| ||||||||||||||||| || ||||| ||||| |
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| T |
30409086 |
gacaattagaatgagtacatttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctctga |
30409182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 30395454 - 30395515
Alignment:
| Q |
128 |
cttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatc |
189 |
Q |
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||||| |||| |||||| ||||| ||||||||||| ||||||||||||||||| || ||||| |
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| T |
30395454 |
cttctcggatattcactgccttttacttgtttttggccatattttctccaattataaccatc |
30395515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 17665257 - 17665311
Alignment:
| Q |
152 |
acttgtttttgtccatattttctccaattgtatccatcatctgatcttctactaa |
206 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
17665257 |
acttgtttttgaccatattttctccaattgtattcatcatctgattttctgctaa |
17665311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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