View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1116_low_1 (Length: 531)
Name: NF1116_low_1
Description: NF1116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1116_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 30 - 531
Target Start/End: Complemental strand, 4583499 - 4582998
Alignment:
| Q |
30 |
caatcagctggatttcccttactactcccactcatattttacttcaaaccacatgatcaattcacaaacatgttcagcaatgataattcctccataatca |
129 |
Q |
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| T |
4583499 |
caatcagctggatttcccttactactcccactcatattttacttcaaaccacatgatcaattcaaaaacatgttcagcaatgataattcctccataatca |
4583400 |
T |
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| Q |
130 |
gaccaaannnnnnngccctatacttaggttttggtttacttgtagaaggggtttacttgatgtattcatatggacttgtatatcttcctctttccacttt |
229 |
Q |
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| T |
4583399 |
aaccaaatttttttgccctatacttaggttttggtttacttgtagaaggggtttacttgatgtattcatatgggcttgtatatcttcctctttccacttt |
4583300 |
T |
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| Q |
230 |
ttctctaatatgctcaactgaattagccttcaatgcattattctctttcttcttgaattctcaaagggttacagcattaatattcaattctgtattcctc |
329 |
Q |
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| T |
4583299 |
ttctctaatatgctcaactgaattagccttcaatgcattattctctttcttcttgaattctcaaaggtttacagcattaatattcaattctgtattcctc |
4583200 |
T |
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| Q |
330 |
cttaccatatcaacttcattgcttgccgtcgattccatttctgaagactcaacggatcttcatagagaaaaatacatacttggtttcctcttcactcttg |
429 |
Q |
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| T |
4583199 |
cttaccatatcaacttcattgcttgccgtcgattccatttctgaagactcaacggatcttcatagagaaaaatacatacttggtttcctcttcactcttt |
4583100 |
T |
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| Q |
430 |
gtgcatgttctgcatttgcattatatctcgcccttgtgcaatattcttttgagaaaattataaaaagagaaacattttctgcaatcttggacatgcaatt |
529 |
Q |
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| T |
4583099 |
gtgcatgtgctgcatttgcattatatctcgcccttgtgcaatattcttttgagaaaattataaaaagagaaacattttctgcaatcttggacatgcaatt |
4583000 |
T |
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| Q |
530 |
tt |
531 |
Q |
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| T |
4582999 |
tt |
4582998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 323
Target Start/End: Original strand, 40838761 - 40838898
Alignment:
| Q |
186 |
ttgatgtattcatatggacttgtatatcttcctctttccactttttctctaatatgctcaactgaattagccttcaatgcattattctctttcttcttga |
285 |
Q |
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| T |
40838761 |
ttgatgtattccaatggacttctatatctttcactttccacctattctttactatgtgcaacacaattagccttcaatgcagtattttcttatttcctta |
40838860 |
T |
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| Q |
286 |
attctcaaagggttacagcattaatattcaattctgta |
323 |
Q |
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| T |
40838861 |
attcccaaaagttcacagcattcatattcaattctgta |
40838898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 531
Target Start/End: Original strand, 40838984 - 40839109
Alignment:
| Q |
406 |
tacttggtttcctcttcactcttggtgcatgttctgcatttgcattatatctcgcccttgtgcaatattcttttgagaaaattataaaaagagaaacatt |
505 |
Q |
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| T |
40838984 |
tacttggattcgtcttcacccttggtgcatctgttacattttctttatatctttcccttgtgcagctttcttttgacaaagttataaaaagcgaaacctt |
40839083 |
T |
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| Q |
506 |
ttctgcaatcttggacatgcaatttt |
531 |
Q |
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| T |
40839084 |
ttctgttatattagacatgcaatttt |
40839109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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