View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1116_low_10 (Length: 324)
Name: NF1116_low_10
Description: NF1116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1116_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 1842534 - 1842752
Alignment:
| Q |
1 |
atcaaaatgaaagagaaattctttgagcagaatggtggtctgattttaaaacaaaaactctcaacaagagaagactc---aactgaaagcactaaaatat |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1842534 |
atcaaaatgaaagagaaattctttgagcagaatggtggtctgattttaaaacaaaaactctcaacaagagaagactcctcaactgaaagcactaaaatat |
1842633 |
T |
|
| Q |
98 |
tcacacaagatcagctaaacaaggccaccaaagacttcgacgagaatttaatcattggcaaaggtggttttggtactgtttacaaaggatttctagatga |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1842634 |
tcacacaagatcagctaaacaaggccaccaaagactttgacgagaatttaatcattggcaaaggtggttttggtactgtttacaaaggatttctagatga |
1842733 |
T |
|
| Q |
198 |
taaaagaatcgttgctatc |
216 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1842734 |
taaaagaatcgttgctatc |
1842752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 1868220 - 1868361
Alignment:
| Q |
75 |
ctcaactgaaagcactaaaatattcacacaagatcagctaaacaaggccaccaaagacttcgacgagaatttaatcattggcaaaggtggttttggtact |
174 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1868220 |
ctcaactcaaagtgctaaaatattcacacaagatcagctaaacaaggcaaccaaaaacttcgacgagaatttaatcattggcaaaggtggttttggtacc |
1868319 |
T |
|
| Q |
175 |
gtttacaaaggatttctagatgataaaagaatcgttgctatc |
216 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1868320 |
gttttcaaaggacttctagatgataaaagaatcgttgctatc |
1868361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1868119 - 1868195
Alignment:
| Q |
1 |
atcaaaatgaaagagaaattctttgagcagaatggtggtctgattttaaaacaaaaactctcaacaagagaagactc |
77 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1868119 |
atcaaaatgaaagagaaattcttcgaacagaatggtggtttgattttgaaacaaaaactctcaacaagagaagactc |
1868195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 9171053 - 9170959
Alignment:
| Q |
92 |
aaatattcacacaagatcagctaaacaaggccaccaaagacttcgacgagaatttaatcattggcaaaggtggttttggtactgtttacaaagga |
186 |
Q |
| |
|
||||||||||| |||| | || || || ||||||||| ||| ||| || | ||||||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
9171053 |
aaatattcacagaagaggaacttaagaaagccaccaaaaactacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaagga |
9170959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 9179035 - 9178941
Alignment:
| Q |
92 |
aaatattcacacaagatcagctaaacaaggccaccaaagacttcgacgagaatttaatcattggcaaaggtggttttggtactgtttacaaagga |
186 |
Q |
| |
|
||||||||||| |||| | || || || ||||||||| ||| ||| || | ||||||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
9179035 |
aaatattcacagaagaggaacttaagaaagccaccaaaaactacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaagga |
9178941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 9156286 - 9156221
Alignment:
| Q |
121 |
gccaccaaagacttcgacgagaatttaatcattggcaaaggtggttttggtactgtttacaaagga |
186 |
Q |
| |
|
||||||||| ||| ||| || || ||||||||||||| ||| ||||||||||| |||| ||||||| |
|
|
| T |
9156286 |
gccaccaaaaactacgatgaaaacttaatcattggcagaggaggttttggtacagttttcaaagga |
9156221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University