View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1116_low_17 (Length: 252)
Name: NF1116_low_17
Description: NF1116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1116_low_17 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 47288846 - 47289081
Alignment:
| Q |
8 |
ccaagaaaatatatttagctaccacaaatgttattatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgatagatgtattat |
107 |
Q |
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| T |
47288846 |
ccaataaaatatatttagctaccacaaatgtgcttatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgatagatgtattat |
47288945 |
T |
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| Q |
108 |
gtcttatttcgaaaattttgatcccataaacaaggataattttaggtagacaccccttttaaaccatacacactctacacacatcccatgtggcatcatt |
207 |
Q |
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| T |
47288946 |
accttatttcgaaaattttgatcccataaacaaggataattttaggtagacaccctttttgaacca---------tacacacatcctatgtggcatcatt |
47289036 |
T |
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| Q |
208 |
tgccatagtggannnnnnnnngttttatttaaaataaaagtaaac |
252 |
Q |
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| T |
47289037 |
tgtcatagtggatttttttttgttttatttaaaataaaagtaaac |
47289081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 15664447 - 15664320
Alignment:
| Q |
13 |
aaaatatatttagctaccacaaatgttattatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgatagatgtattatgtctt |
112 |
Q |
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| T |
15664447 |
aaaatatatttagctaccgcaaatgagtttatttgtcaaaagctagtagaaataggaaaatcaaaagatatttacttgtttgatagatgttttatgtctt |
15664348 |
T |
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| Q |
113 |
atttcgaaaattttgatcccataaacaa |
140 |
Q |
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| T |
15664347 |
attttaaaacttttgatcccataaacaa |
15664320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 30785609 - 30785512
Alignment:
| Q |
42 |
tatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgatagatgtattatgtcttatttcgaaaattttgatcccataaaca |
139 |
Q |
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| T |
30785609 |
tatttgtcaaaaattagtagaaataggaaagccaaaatatattcacttgtttaatagatatattccgtattattttgacacttttgatctcttaaaca |
30785512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 33065 - 33136
Alignment:
| Q |
148 |
tttaggtagacaccccttttaaaccatacacactctacacacatcccatgtggcatcatttgccatagtgga |
219 |
Q |
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| T |
33065 |
tttacgtagacatcccttttgaaccatacacaccatacacacatcccatgtggcatcatttgtcatagtgga |
33136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 43487318 - 43487262
Alignment:
| Q |
7 |
tccaagaaaatatatttagctaccacaaatgttattatttgtcaaaaattagtagaa |
63 |
Q |
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| T |
43487318 |
tccaataatatatatttagctaccacaaatgagattatttgtcgaaaattagtagaa |
43487262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 42675387 - 42675323
Alignment:
| Q |
41 |
ttatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgatagatgtatt |
105 |
Q |
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| T |
42675387 |
ttatttgtcaaaaactagtagaaattaaaaagtcaaaagatatctacttgtttgatagaagtatt |
42675323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 2543172 - 2543098
Alignment:
| Q |
41 |
ttatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgatagatgtattatgtcttattt |
116 |
Q |
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| T |
2543172 |
ttatttatcaaaaactagtaaaa-taagaaagtcaaaagacatctacttgtttgatagatgtattttgtcttattt |
2543098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 2533632 - 2533533
Alignment:
| Q |
16 |
atatatttagctaccacaaatgttattatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgatagatgtattatgtcttatt |
115 |
Q |
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| T |
2533632 |
atatatatagttaccacaaatgaatttatttatcaaaaactagtaaaaataagaaagtc-aaagacatctacttgtttgatagatgtattttgttttatt |
2533534 |
T |
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