View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1116_low_2 (Length: 525)
Name: NF1116_low_2
Description: NF1116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1116_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 42113659 - 42114087
Alignment:
| Q |
1 |
cattgttttttctcttggattctttgaaccagcttttctcttaacgttgttgtttctcctcaacgcttccatcagaaaaaagacaccaaacgacggttgg |
100 |
Q |
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| T |
42113659 |
cattgttttttctcttggattctttgaaccagcttttctcttaacgttgttgtttctcctcaacgcttccatcagaaaaaagacaccaaacgacggttgg |
42113758 |
T |
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| Q |
101 |
gctgtaacctttgtgtttagcacgtgtcttccattaggtattcttcaaggtttacttgtctatttcaatccattggaacatcgtgttccggcgttgttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42113759 |
gctgtaacctttgtgtttagcacgtgtcttccattaggtattcttcaaggtttacttgtctatttcaatccattggaacatcgtgttccggcgttgttac |
42113858 |
T |
|
| Q |
201 |
gacaaacatttgttattctagaagacgacaccgttctctgcgcttacccgttcttaaacagcgttgtgttcgccgcattcgctgctgcatattgtgcatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
42113859 |
gacaaacatttgttattctagaagacgacaccgttctctgtgcttacccgttcttaaacagcgttgtgttcgcggcattctctgctgcatattgtgcatg |
42113958 |
T |
|
| Q |
301 |
gttattgttctcatgttggaaggttttatcattggtgattaacaaaggattaaggattcgaatctacgcattgggttctgtcgttttggtggctcttcct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42113959 |
gttattgttctcatgttggaaggttttatcattggtgattaacaaaggattaaggattcgaatctacgcattgggttctgtcgttttggtggctcttcct |
42114058 |
T |
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| Q |
401 |
cttcaggttgtatcgttggccttcaccgt |
429 |
Q |
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||||||||||| ||||||||||||||||| |
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| T |
42114059 |
cttcaggttgtgtcgttggccttcaccgt |
42114087 |
T |
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