View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1116_low_21 (Length: 235)

Name: NF1116_low_21
Description: NF1116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1116_low_21
NF1116_low_21
[»] chr2 (22 HSPs)
chr2 (1-235)||(44615282-44615516)
chr2 (1-233)||(44624657-44624889)
chr2 (1-235)||(39152935-39153166)
chr2 (15-231)||(39138526-39138739)
chr2 (7-231)||(39216537-39216758)
chr2 (1-231)||(39196585-39196812)
chr2 (1-222)||(39396727-39396945)
chr2 (1-226)||(39387569-39387791)
chr2 (1-226)||(44895182-44895404)
chr2 (1-116)||(39205817-39205929)
chr2 (1-119)||(39421258-39421373)
chr2 (8-113)||(39371115-39371217)
chr2 (128-222)||(39472969-39473063)
chr2 (123-171)||(44749731-44749779)
chr2 (78-211)||(39380643-39380776)
chr2 (182-235)||(39604192-39604245)
chr2 (175-231)||(39223594-39223650)
chr2 (1-56)||(39413104-39413159)
chr2 (43-114)||(39099584-39099652)
chr2 (182-219)||(39144488-39144525)
chr2 (182-219)||(39493692-39493729)
chr2 (175-231)||(39205988-39206044)
[»] chr5 (2 HSPs)
chr5 (7-231)||(17060526-17060747)
chr5 (7-231)||(33562169-33562390)
[»] chr6 (1 HSPs)
chr6 (7-222)||(16114256-16114468)
[»] chr8 (3 HSPs)
chr8 (99-229)||(44950036-44950169)
chr8 (1-69)||(44730154-44730222)
chr8 (1-119)||(45342957-45343072)
[»] chr7 (1 HSPs)
chr7 (15-222)||(19808795-19808996)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 44615516 - 44615282
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615516 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 44615417  T
Q  101 gttgttctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaag 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44615416 gttgttctagcagatagatccagccttcatcaataatcaccgctttgtctcctttcttaggcagtggaatcgtagggtttagtattatatccaaaacaag 44615317  T
Q  201 ttttgctggatctgatgattctcgcaaattatcta 235  Q
    |||||||||||||||||||||||||||||||||||    
T  44615316 ttttgctggatctgatgattctcgcaaattatcta 44615282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 44624889 - 44624657
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||   ||||||||||||||||| ||||||    
T  44624889 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtt---taatatttggtgagattgtcatca 44624793  T
Q  101 gttgttctagcagatagatccagc---cttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaac 197  Q
    ||| ||||||||||||||| | ||   | |||||||||||||||||||||||||||||| |||| ||||| ||  | ||||| |||||||||||||||||    
T  44624792 gtttttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcctttcttaggaagtgggataatggggttcagtattatatccaaaac 44624693  T
Q  198 aagttttgctggatctgatgattctcgcaaattatc 233  Q
    || |||||||||||||||||||||||||||||||||    
T  44624692 aatttttgctggatctgatgattctcgcaaattatc 44624657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 39153166 - 39152935
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| ||||||||||| || ||||||||||| |||   || || ||||| ||||| ||||||||||||| ||||||    || ||||||||| ||||||    
T  39153166 ttttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctcttacacaaggtttaatc---ttcggtgagattctcatca 39153070  T
Q  101 gttgttctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaag 200  Q
    |||||||||||||| |||| ||||   |||| ||||||||||| | |||||| ||| ||  | |||||||  | |||||  ||||||||||||| ||||     
T  39153069 gttgttctagcagaaagatgcagctaccatctataatcacagcatggtctccgttcttataccgtggaataattgggttctgtattatatccaacacaat 39152970  T
Q  201 ttttgctggatctgatgattctcgcaaattatcta 235  Q
    |||||||||||||||||||||| |||  |||||||    
T  39152969 ttttgctggatctgatgattcttgcaggttatcta 39152935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 39138739 - 39138526
Alignment:
Q  15 tttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcaga 114  Q
    |||||||||||||||||  | |   ||||||||||| ||||| |||||||||  || ||||||    || ||||||||| ||||||||||||||||||||    
T  39138739 tttcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtttaatc---ttcggtgagattctcatcagttgttctagcaga 39138643  T
Q  115 tagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaagttttgctggatctg 214  Q
     |||| ||||| ||||||||||||||||| |  ||||| ||| ||  | |||||||  | || ||  |||||||||||||||||| ||||||||||||||    
T  39138642 aagatgcagccatcatcaataatcacagcatgttctccattcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctg 39138543  T
Q  215 atgattctcgcaaatta 231  Q
    |||||||| ||| ||||    
T  39138542 atgattcttgcagatta 39138526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 39216758 - 39216537
Alignment:
Q  7 gtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgtt 106  Q
    ||||||||  ||||||||| |||||| ||| | ||||||||||| ||||| ||||||||||||| |||||||  |   ||||||||| ||||||||||||    
T  39216758 gtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatga---ggtgagattttcatcagttgtt 39216662  T
Q  107 ctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaagttttgc 206  Q
    |||||  ||| ||   |   ||| ||||||||||||| |||||||| ||| ||  || | |||| ||||||||  |||| ||||||||||||||| |||     
T  39216661 ctagcgaataaatatggtaatcagcaataatcacagcattgtctcccttcttacacaattgaatagtagggttctgtatcatatccaaaacaagtcttga 39216562  T
Q  207 tggatctgatgattctcgcaaatta 231  Q
    |||||||||||| ||| ||||||||    
T  39216561 tggatctgatgagtctagcaaatta 39216537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 39196585 - 39196812
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| ||||| || ||||||||||||||||| ||| | ||||||||||| ||||| | ||| ||||||| ||   |||||| |||||||||| ||||||    
T  39196585 ttttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtt---taatatctggtgagattctcatca 39196681  T
Q  101 gttgttctagcagatagatccagccttcatcaataatcacagctttgtctcc--tttcctaggcagtggaatcgtagggtttagtattatatccaaaaca 198  Q
    ||||||| |||||||||||   |   ||| |||||| |||||| || |||||  ||||| |  | |||||||  | ||||| ||||| || |||||||||    
T  39196682 gttgttccagcagatagatttggtaatcaacaataaccacagcattatctcccttttccca--ctgtggaatgatggggttcagtatcatttccaaaaca 39196779  T
Q  199 agttttgctggatctgatgattctcgcaaatta 231  Q
    ||||||| |||||||||||||||| ||| ||||    
T  39196780 agttttgatggatctgatgattcttgcagatta 39196812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39396727 - 39396945
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| ||||||||| | |||| |||| |||| |||   ||||||||||  ||||| ||||||||||||| |    ||||| ||||||||||| ||||||    
T  39396727 ttttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctcttacacaaggt---ctaatagttggtgagattctcatca 39396823  T
Q  101 gttgttctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaag 200  Q
    ||| ||||||||  |||||   ||  || ||||||| |||| | |||||||| ||| ||  |||||||||  | |||||| |||||||||||||||||||    
T  39396824 gttcttctagcacgtagatgtggctatcctcaataaccacaccattgtctcccttcttacacagtggaataatggggttttgtattatatccaaaacaag 39396923  T
Q  201 ttttgctggatctgatgattct 222  Q
    | ||| ||||||||||||||||    
T  39396924 tcttgatggatctgatgattct 39396945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 39387569 - 39387791
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| ||||||||||||||||||||||| || |||| |||||||||||| ||||| | | ||||||||| ||    ||| ||||||||| || ||||||    
T  39387569 ttttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttctttttttacacaagttt---caatttttggtgaggttctcatca 39387665  T
Q  101 gttgttctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaag 200  Q
    |||||||||||| || |||   |   ||| ||||||||||||  |||||  | ||   |  |||||||||   |||||| | ||| ||||||||||||||    
T  39387666 gttgttctagcatatggatttggtaatcagcaataatcacagaattgtcaaccttttgacacagtggaataacagggttcaatatcatatccaaaacaag 39387765  T
Q  201 ttttgctggatctgatgattctcgca 226  Q
    ||||| ||| || |||||||||||||    
T  39387766 ttttgatgggtccgatgattctcgca 39387791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 44895182 - 44895404
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| |||||| |||| ||||||||||| || | |   ||||||||||| ||||  |||||||||| || |||||||||   |||||| |||  |||||    
T  44895182 ttttcagtatttccttttatgttagctttgaatttatgtgctagcttcaatgcttgttctcttacacgaggtttaataat---tggtgacattcccatca 44895278  T
Q  101 gttgttctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaag 200  Q
    ||  ||||||||||||||| |  |  |||||||||| || | | |||||  | ||| ||  |||||| ||  |||||||  |||||||||||||||||||    
T  44895279 gtgtttctagcagatagatgcgccaatcatcaataaccaaatcattgtcatccttcttactcagtggcatactagggttctgtattatatccaaaacaag 44895378  T
Q  201 ttttgctggatctgatgattctcgca 226  Q
    |||||| |||| ||||||||||||||    
T  44895379 ttttgcaggatttgatgattctcgca 44895404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 39205817 - 39205929
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| |||||||||||||| ||||||||||| ||| | ||||||||||| ||||  ||||| ||||||| || |||||    |||||||||| ||||||    
T  39205817 ttttcagtattttctttcatcttagctttcaagtcaaatgctagcttcaatgctttttctctcacacaaggttcaataa---ctggtgagattctcatca 39205913  T
Q  101 gttgttctagcagata 116  Q
    ||||||| ||||||||    
T  39205914 gttgttcaagcagata 39205929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 39421258 - 39421373
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| |||||||||| ||| ||||||||||| |||   || |||||||| ||||| ||| ||||||||| |||||||   | |||||||||| ||||||    
T  39421258 ttttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttcttcttttacacaagttttaata---tgtggtgagattttcatca 39421354  T
Q  101 gttgttctagcagatagat 119  Q
    |||||||||||||| ||||    
T  39421355 gttgttctagcagaaagat 39421373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 39371217 - 39371115
Alignment:
Q  8 tattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttc 107  Q
    |||||||||||||||| |||||||  |||   ||||||||||| |||||||||||||||||||  |    |||||||||||||||| |||| ||||||||    
T  39371217 tattttctttcatgttggctttcatatcaagtgctagcttcaatgcttcatctcttacacaaggct---caatatttggtgagattttcataagttgttc 39371121  T
Q  108 tagcag 113  Q
    ||||||    
T  39371120 tagcag 39371115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 39472969 - 39473063
Alignment:
Q  128 catcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaagttttgctggatctgatgattct 222  Q
    |||||||||||||||| | |||||| ||| ||  | |||||||  | ||||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  39472969 catcaataatcacagcatggtctcccttcttacaccgtggaataatcgggttcagtattatatccagaacaaattttgctggatctgatgattct 39473063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 44749779 - 44749731
Alignment:
Q  123 gccttcatcaataatcacagctttgtctcctttcctaggcagtggaatc 171  Q
    ||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  44749779 gccttcatcaataatcacagctttgtcacccttcttaggcagtggaatc 44749731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 39380643 - 39380776
Alignment:
Q  78 aatatttggtgagattatcatcagttgttctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtaggg 177  Q
    |||||| ||||||| | |||||||||||||||||||| |||| | ||  |||| || ||||||||| |||||||| ||| |   ||||||| |  | ||     
T  39380643 aatattcggtgagactctcatcagttgttctagcagaaagatgcggctatcataaaaaatcacagcattgtctcccttcttgcacagtggattaatcggt 39380742  T
Q  178 tttagtattatatccaaaacaagttttgctggat 211  Q
    ||  |||||||||| ||||||| |||||||||||    
T  39380743 ttatgtattatatctaaaacaacttttgctggat 39380776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 39604245 - 39604192
Alignment:
Q  182 gtattatatccaaaacaagttttgctggatctgatgattctcgcaaattatcta 235  Q
    |||||||||||||||||| ||||| ||||||||||||| || ||| ||||||||    
T  39604245 gtattatatccaaaacaacttttgatggatctgatgatccttgcagattatcta 39604192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 39223650 - 39223594
Alignment:
Q  175 gggtttagtattatatccaaaacaagttttgctggatctgatgattctcgcaaatta 231  Q
    ||||| ||||| || |||||||||||||||| |||||||||||||||| ||| ||||    
T  39223650 gggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 39223594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39413104 - 39413159
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttc 56  Q
    ||||||||||||||||||| |||||||||||| |||   ||||||||||| |||||    
T  39413104 ttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgcttc 39413159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 39099652 - 39099584
Alignment:
Q  43 agcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcaga 114  Q
    ||||||| |||||| ||||||||||||| ||| |||   | |||||||||| ||||||||||||| ||||||    
T  39099652 agcttcatcgcttcttctcttacacaaggtttgata---tgtggtgagattctcatcagttgttcgagcaga 39099584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 39144525 - 39144488
Alignment:
Q  182 gtattatatccaaaacaagttttgctggatctgatgat 219  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  39144525 gtattatatccaaaacaacttttgatggatctgatgat 39144488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 39493692 - 39493729
Alignment:
Q  182 gtattatatccaaaacaagttttgctggatctgatgat 219  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  39493692 gtattatatccaaaacaacttttgatggatctgatgat 39493729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 39205988 - 39206044
Alignment:
Q  175 gggtttagtattatatccaaaacaagttttgctggatctgatgattctcgcaaatta 231  Q
    ||||| ||||| || |||||||||||||||| |||||||| ||||||| ||| ||||    
T  39205988 gggttcagtatcatttccaaaacaagttttgatggatctgctgattcttgcagatta 39206044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 17060747 - 17060526
Alignment:
Q  7 gtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgtt 106  Q
    |||||| |||| ||||||||||||||||||   ||||||||||| ||||| ||| |||||||||||||||||   |||||||| ||||||||||||||||    
T  17060747 gtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttcgtcttttacacaagatttaata---tttggtgacattatcatcagttgtt 17060651  T
Q  107 ctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaagttttgc 206  Q
    |||||| | |||| | || |||||||||||||||| |||||||||| ||| |||| ||||||||  | ||||| | ||||| ||||||||||| |||||     
T  17060650 ctagcataaagatgcggctttcatcaataatcacaactttgtctcccttcttaggtagtggaataatggggttcattattacatccaaaacaatttttga 17060551  T
Q  207 tggatctgatgattctcgcaaatta 231  Q
    |||||| ||||||||| ||||||||    
T  17060550 tggatccgatgattcttgcaaatta 17060526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 33562390 - 33562169
Alignment:
Q  7 gtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgtt 106  Q
    |||||||||||||||||||||||||| ||| | ||||||||||| ||||| | ||| ||||||| ||    ||||| |||||||||| ||||||||||||    
T  33562390 gtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtt---caatatctggtgagattctcatcagttgtt 33562294  T
Q  107 ctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaagttttgc 206  Q
    | || ||||||||   |   ||| ||||||| ||| | |||||||| ||   |  ||||||||   | ||||| ||||| || ||||||||||||||||     
T  33562293 ccagaagatagatttggtaatcaacaataatgacaacattgtctcccttttgacacagtggaaagatggggttcagtatcatttccaaaacaagttttga 33562194  T
Q  207 tggatctgatgattctcgcaaatta 231  Q
    |||||||||||||||| ||| ||||    
T  33562193 tggatctgatgattcttgcagatta 33562169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 16114468 - 16114256
Alignment:
Q  7 gtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgtt 106  Q
    ||||| ||| |||||| ||||||||| || | |||||||||||| ||||  |||||||||| || ||||||| |   |||||| ||| ||||||||| ||    
T  16114468 gtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctttttctcttacacgaggtttaatagt---tggtgatattctcatcagttctt 16114372  T
Q  107 ctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaagttttgc 206  Q
    ||| |||||||||   || |||||||||||||||||| |||||||| ||| ||  ||||||| |    |||||  |||||||||||||||||||| |||     
T  16114371 ctaacagatagatgtggcattcatcaataatcacagcattgtctcccttcttacacagtggagtaccggggttctgtattatatccaaaacaagtcttga 16114272  T
Q  207 tggatctgatgattct 222  Q
    |||||||| |||||||    
T  16114271 tggatctgctgattct 16114256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 229
Target Start/End: Original strand, 44950036 - 44950169
Alignment:
Q  99 cagttgttctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagg---gtttagtattatatccaaa 195  Q
    |||||||||||| |||||||  | || ||||||||||||||||||||||||||| ||| |||||| |||||   | ||   || ||||||||||||||||    
T  44950036 cagttgttctagaagatagacgcggctttcatcaataatcacagctttgtctcccttcttaggcaatggaaatatggggtcgtctagtattatatccaaa 44950135  T
Q  196 acaagttttgctggatctgatgattctcgcaaat 229  Q
    |||| ||| |||  ||||||||||||||||||||    
T  44950136 acaattttcgctatatctgatgattctcgcaaat 44950169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 44730222 - 44730154
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaa 69  Q
    ||||| ||||||||||| ||||||||||||||||||   ||||||||||| ||||||||||||||||||    
T  44730222 ttttcagtattttcttttatgttagctttcaactcatgtgctagcttcaaagcttcatctcttacacaa 44730154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 45343072 - 45342957
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| |||||| |||||| ||||||||||||||||   |||||||| || ||||| ||||||||||||| ||||||| |   |||  ||||| ||||||    
T  45343072 ttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatact---tggcaagattctcatca 45342976  T
Q  101 gttgttctagcagatagat 119  Q
    |||||||||| ||||||||    
T  45342975 gttgttctaggagatagat 45342957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 19808996 - 19808795
Alignment:
Q  15 tttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcaga 114  Q
    |||||||||||||||||| |||   ||||||||||| | ||| |||||||||| || ||   |||| || ||||||||| ||||||||||||||||||||    
T  19808996 tttcatgttagctttcaaatcaagtgctagcttcaatgtttcttctcttacaccaggtt---taatcttcggtgagattctcatcagttgttctagcaga 19808900  T
Q  115 tagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaagttttgctggatctg 214  Q
     |||  | ||   ||||||||   ||||| | |||||| |   ||    |||||||  | |||||| |||||||||||||||||| ||||| ||||||||    
T  19808899 aagacactgctaccatcaata---acagcatggtctccctcgttacatcgtggaataattgggttttgtattatatccaaaacaacttttgttggatctg 19808803  T
Q  215 atgattct 222  Q
    ||||||||    
T  19808802 atgattct 19808795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University