View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1116_low_24 (Length: 201)

Name: NF1116_low_24
Description: NF1116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1116_low_24
NF1116_low_24
[»] chr2 (15 HSPs)
chr2 (1-201)||(44615316-44615516)
chr2 (1-199)||(44624691-44624889)
chr2 (1-119)||(39196585-39196700)
chr2 (1-116)||(39205817-39205929)
chr2 (1-112)||(39387569-39387677)
chr2 (1-119)||(39421258-39421373)
chr2 (8-113)||(39371115-39371217)
chr2 (15-143)||(39138614-39138739)
chr2 (7-111)||(39216657-39216758)
chr2 (1-124)||(39153046-39153166)
chr2 (1-201)||(39396727-39396924)
chr2 (1-56)||(39413104-39413159)
chr2 (43-114)||(39099584-39099652)
chr2 (123-171)||(44749731-44749779)
chr2 (1-119)||(44895182-44895297)
[»] chr5 (2 HSPs)
chr5 (7-199)||(17060558-17060747)
chr5 (7-119)||(33562281-33562390)
[»] chr8 (3 HSPs)
chr8 (1-69)||(44730154-44730222)
chr8 (1-119)||(45342957-45343072)
chr8 (99-169)||(44950036-44950106)
[»] chr6 (1 HSPs)
chr6 (7-201)||(16114277-16114468)
[»] chr7 (1 HSPs)
chr7 (15-114)||(19808900-19808996)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 5e-98; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 44615516 - 44615316
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615516 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 44615417  T
Q  101 gttgttctagcagatagatccagccttcatcaataatcccagctttgtctcctttcctagtcagtggaatcgtagggattagtattatatccaaaacaag 200  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  44615416 gttgttctagcagatagatccagccttcatcaataatcaccgctttgtctcctttcttaggcagtggaatcgtagggtttagtattatatccaaaacaag 44615317  T
Q  201 t 201  Q
    |    
T  44615316 t 44615316  T

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Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 44624889 - 44624691
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||   ||||||||||||||||| ||||||    
T  44624889 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtt---taatatttggtgagattgtcatca 44624793  T
Q  101 gttgttctagcagatagatccagc---cttcatcaataatcccagctttgtctcctttcctagtcagtggaatcgtagggattagtattatatccaaaac 197  Q
    ||| ||||||||||||||| | ||   | |||||||||||| ||||||||||||||||| |||  ||||| ||  | ||| | |||||||||||||||||    
T  44624792 gtttttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcctttcttaggaagtgggataatggggttcagtattatatccaaaac 44624693  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 39196585 - 39196700
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| ||||| || ||||||||||||||||| ||| | ||||||||||| ||||| | ||| ||||||| ||   |||||| |||||||||| ||||||    
T  39196585 ttttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtt---taatatctggtgagattctcatca 39196681  T
Q  101 gttgttctagcagatagat 119  Q
    ||||||| |||||||||||    
T  39196682 gttgttccagcagatagat 39196700  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 39205817 - 39205929
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| |||||||||||||| ||||||||||| ||| | ||||||||||| ||||  ||||| ||||||| || |||||    |||||||||| ||||||    
T  39205817 ttttcagtattttctttcatcttagctttcaagtcaaatgctagcttcaatgctttttctctcacacaaggttcaataa---ctggtgagattctcatca 39205913  T
Q  101 gttgttctagcagata 116  Q
    ||||||| ||||||||    
T  39205914 gttgttcaagcagata 39205929  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 39387569 - 39387677
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| ||||||||||||||||||||||| || |||| |||||||||||| ||||| | | ||||||||| ||    ||| ||||||||| || ||||||    
T  39387569 ttttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttctttttttacacaagttt---caatttttggtgaggttctcatca 39387665  T
Q  101 gttgttctagca 112  Q
    ||||||||||||    
T  39387666 gttgttctagca 39387677  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 39421258 - 39421373
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| |||||||||| ||| ||||||||||| |||   || |||||||| ||||| ||| ||||||||| |||||||   | |||||||||| ||||||    
T  39421258 ttttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttcttcttttacacaagttttaata---tgtggtgagattttcatca 39421354  T
Q  101 gttgttctagcagatagat 119  Q
    |||||||||||||| ||||    
T  39421355 gttgttctagcagaaagat 39421373  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 39371217 - 39371115
Alignment:
Q  8 tattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttc 107  Q
    |||||||||||||||| |||||||  |||   ||||||||||| |||||||||||||||||||  |    |||||||||||||||| |||| ||||||||    
T  39371217 tattttctttcatgttggctttcatatcaagtgctagcttcaatgcttcatctcttacacaaggct---caatatttggtgagattttcataagttgttc 39371121  T
Q  108 tagcag 113  Q
    ||||||    
T  39371120 tagcag 39371115  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 39138739 - 39138614
Alignment:
Q  15 tttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcaga 114  Q
    |||||||||||||||||  | |   ||||||||||| ||||| |||||||||  || ||||||    || ||||||||| ||||||||||||||||||||    
T  39138739 tttcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtttaatc---ttcggtgagattctcatcagttgttctagcaga 39138643  T
Q  115 tagatccagccttcatcaataatcccagc 143  Q
     |||| ||||| |||||||||||| ||||    
T  39138642 aagatgcagccatcatcaataatcacagc 39138614  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 39216758 - 39216657
Alignment:
Q  7 gtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgtt 106  Q
    ||||||||  ||||||||| |||||| ||| | ||||||||||| ||||| ||||||||||||| |||||||  |   ||||||||| ||||||||||||    
T  39216758 gtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatga---ggtgagattttcatcagttgtt 39216662  T
Q  107 ctagc 111  Q
    |||||    
T  39216661 ctagc 39216657  T

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Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 39153166 - 39153046
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| ||||||||||| || ||||||||||| |||   || || ||||| ||||| ||||||||||||| ||   |||| || ||||||||| ||||||    
T  39153166 ttttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctcttacacaaggtt---taatcttcggtgagattctcatca 39153070  T
Q  101 gttgttctagcagatagatccagc 124  Q
    |||||||||||||| |||| ||||    
T  39153069 gttgttctagcagaaagatgcagc 39153046  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 39396727 - 39396924
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| ||||||||| | |||| |||| |||| |||   ||||||||||  ||||| ||||||||||||| |    ||||| ||||||||||| ||||||    
T  39396727 ttttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctcttacacaaggt---ctaatagttggtgagattctcatca 39396823  T
Q  101 gttgttctagcagatagatccagccttcatcaataatcccagctttgtctcctttcctagtcagtggaatcgtagggattagtattatatccaaaacaag 200  Q
    ||| ||||||||  |||||   ||  || ||||||| | || | |||||||| ||| ||  |||||||||  | ||| || |||||||||||||||||||    
T  39396824 gttcttctagcacgtagatgtggctatcctcaataaccacaccattgtctcccttcttacacagtggaataatggggttttgtattatatccaaaacaag 39396923  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39413104 - 39413159
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttc 56  Q
    ||||||||||||||||||| |||||||||||| |||   ||||||||||| |||||    
T  39413104 ttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgcttc 39413159  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 39099652 - 39099584
Alignment:
Q  43 agcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcaga 114  Q
    ||||||| |||||| ||||||||||||| ||| |||   | |||||||||| ||||||||||||| ||||||    
T  39099652 agcttcatcgcttcttctcttacacaaggtttgata---tgtggtgagattctcatcagttgttcgagcaga 39099584  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 44749779 - 44749731
Alignment:
Q  123 gccttcatcaataatcccagctttgtctcctttcctagtcagtggaatc 171  Q
    |||||||||||||||| |||||||||| || ||| ||| ||||||||||    
T  44749779 gccttcatcaataatcacagctttgtcacccttcttaggcagtggaatc 44749731  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 44895182 - 44895297
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| |||||| |||| ||||||||||| || | |   ||||||||||| ||||  |||||||||| || ||||||||   ||||||| |||  |||||    
T  44895182 ttttcagtatttccttttatgttagctttgaatttatgtgctagcttcaatgcttgttctcttacacgaggtttaataa---ttggtgacattcccatca 44895278  T
Q  101 gttgttctagcagatagat 119  Q
    ||  |||||||||||||||    
T  44895279 gtgtttctagcagatagat 44895297  T

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Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 7 - 199
Target Start/End: Complemental strand, 17060747 - 17060558
Alignment:
Q  7 gtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgtt 106  Q
    |||||| |||| ||||||||||||||||||   ||||||||||| ||||| ||| |||||||||||||||||   |||||||| ||||||||||||||||    
T  17060747 gtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttcgtcttttacacaagatttaata---tttggtgacattatcatcagttgtt 17060651  T
Q  107 ctagcagatagatccagccttcatcaataatcccagctttgtctcctttcctagtcagtggaatcgtagggattagtattatatccaaaacaa 199  Q
    |||||| | |||| | || ||||||||||||| || |||||||||| ||| |||  ||||||||  | ||| | | ||||| |||||||||||    
T  17060650 ctagcataaagatgcggctttcatcaataatcacaactttgtctcccttcttaggtagtggaataatggggttcattattacatccaaaacaa 17060558  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 33562390 - 33562281
Alignment:
Q  7 gtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgtt 106  Q
    |||||||||||||||||||||||||| ||| | ||||||||||| ||||| | ||| ||||||| ||    ||||| |||||||||| ||||||||||||    
T  33562390 gtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtt---caatatctggtgagattctcatcagttgtt 33562294  T
Q  107 ctagcagatagat 119  Q
    | || ||||||||    
T  33562293 ccagaagatagat 33562281  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 44730222 - 44730154
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaa 69  Q
    ||||| ||||||||||| ||||||||||||||||||   ||||||||||| ||||||||||||||||||    
T  44730222 ttttcagtattttcttttatgttagctttcaactcatgtgctagcttcaaagcttcatctcttacacaa 44730154  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 45343072 - 45342957
Alignment:
Q  1 ttttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatca 100  Q
    ||||| |||||| |||||| ||||||||||||||||   |||||||| || ||||| ||||||||||||| ||||||| |   |||  ||||| ||||||    
T  45343072 ttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatact---tggcaagattctcatca 45342976  T
Q  101 gttgttctagcagatagat 119  Q
    |||||||||| ||||||||    
T  45342975 gttgttctaggagatagat 45342957  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 44950036 - 44950106
Alignment:
Q  99 cagttgttctagcagatagatccagccttcatcaataatcccagctttgtctcctttcctagtcagtggaa 169  Q
    |||||||||||| |||||||  | || ||||||||||||| ||||||||||||| ||| ||| || |||||    
T  44950036 cagttgttctagaagatagacgcggctttcatcaataatcacagctttgtctcccttcttaggcaatggaa 44950106  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 16114468 - 16114277
Alignment:
Q  7 gtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgtt 106  Q
    ||||| ||| |||||| ||||||||| || | |||||||||||| ||||  |||||||||| || ||||||| |   |||||| ||| ||||||||| ||    
T  16114468 gtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctttttctcttacacgaggtttaatagt---tggtgatattctcatcagttctt 16114372  T
Q  107 ctagcagatagatccagccttcatcaataatcccagctttgtctcctttcctagtcagtggaatcgtagggattagtattatatccaaaacaagt 201  Q
    ||| |||||||||   || ||||||||||||| |||| |||||||| ||| ||  ||||||| |    ||| |  ||||||||||||||||||||    
T  16114371 ctaacagatagatgtggcattcatcaataatcacagcattgtctcccttcttacacagtggagtaccggggttctgtattatatccaaaacaagt 16114277  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 19808996 - 19808900
Alignment:
Q  15 tttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcaga 114  Q
    |||||||||||||||||| |||   ||||||||||| | ||| |||||||||| || ||   |||| || ||||||||| ||||||||||||||||||||    
T  19808996 tttcatgttagctttcaaatcaagtgctagcttcaatgtttcttctcttacaccaggtt---taatcttcggtgagattctcatcagttgttctagcaga 19808900  T

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