View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1116_low_3 (Length: 501)
Name: NF1116_low_3
Description: NF1116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1116_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 320
Target Start/End: Original strand, 18028613 - 18028903
Alignment:
| Q |
30 |
aaagaaaaatggggatcaagaatttaacaaattccagattcaaacatgcacgtttactattagtgtttatagctttcaccaactgagctacgcacgcgag |
129 |
Q |
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| T |
18028613 |
aaagaaaaatggggatcaagaatttaacaaattccagattcaaacatgcacgtttactattagtgttcatagctttcaccaactgagctacacacgcgag |
18028712 |
T |
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| Q |
130 |
actaatttacttgttgtgttgtttgtaaatgtagtggccaggagcatactgtgacacaaagcaaagctgctgttatccgaaaaccggaaaaccgacggca |
229 |
Q |
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| T |
18028713 |
actaatttacttgttgtgttgtttgtaaatgtagtggccaggagcatactgtgacacaaagcagagctgctgttatccgaaaaccggaaaaccgacggca |
18028812 |
T |
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| Q |
230 |
gattttggcattcatggactgtggcctaactacaatgatggatcatggccctcaaactgtgatcctgatagtacctttgataaatctcagg |
320 |
Q |
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| T |
18028813 |
gattttggcattcatggactgtggcctaactacaacgatggatcatggccctcaaactgtgatccagatagtacctttgataaatctcagg |
18028903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 18034551 - 18034678
Alignment:
| Q |
162 |
agtggccaggagcatactgtgacacaaagcaaagctgctgttatccgaaaaccggaaaaccgacggcagattttggcattcatggactgtggcctaacta |
261 |
Q |
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| T |
18034551 |
agtggccaggagcaatctgtgactcaaagcagagctgctgttttccgaaaaccggaaaaccgacagcagattttaccattgctggacttaggcctaactt |
18034650 |
T |
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| Q |
262 |
caatgatggatcatggccctcaaactgt |
289 |
Q |
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| T |
18034651 |
caatgatggatcatctccctcaaactgt |
18034678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 18029001 - 18029072
Alignment:
| Q |
418 |
caactgaaaaactcatcaat-agatatatttaattttatacagatctcagacctaatgaagaacatggagaa |
488 |
Q |
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| T |
18029001 |
caactgaaaaactaatcaatgagttatatttaattttatatagatctcagacctaatgaagaacatggagaa |
18029072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 18052266 - 18052339
Alignment:
| Q |
162 |
agtggccaggagcatactgtgacacaaagcaaagctgctgttatccgaaaaccggaaaaccgacggcagatttt |
235 |
Q |
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| T |
18052266 |
agtggccaggatcatactgtgactcaaaactaggctgctgttatccgaaaaccggtaaaccggcggcagatttt |
18052339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 18047112 - 18047159
Alignment:
| Q |
162 |
agtggccaggagcatactgtgacacaaagcaaagctgctgttatccga |
209 |
Q |
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| T |
18047112 |
agtggccaggagcatactgtgactcaaaccagagctgctgttatccga |
18047159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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