View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1116_low_8 (Length: 381)
Name: NF1116_low_8
Description: NF1116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1116_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 98 - 353
Target Start/End: Original strand, 37190505 - 37190758
Alignment:
| Q |
98 |
aagctcatttgagtttggaataaaacctgaaaaactcgatacaacaactctacatagttacgcagaattccaccagaaagggaataccagtggttgtcag |
197 |
Q |
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| T |
37190505 |
aagctcatttgagtttggaataaaacctgaaaaactcgatacaacaactctacatagttacgcagaattccaccagaaagggaatacca-----tgtcag |
37190599 |
T |
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| Q |
198 |
ggaccatccacatttaggattatacaaaagagacgttg---ttgttccattttatgtatcgatcaacgttaacggcagaagcaatagaagaaaagctaca |
294 |
Q |
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| T |
37190600 |
ggaccatccacatttaggattatacaaaagagacgttgttgttgttccattttatgtatcgatcaacgttaacggcagaagcaatagaagaaaagctaca |
37190699 |
T |
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| Q |
295 |
tatgaagcatgtctttccctcgttccatccccaccacgtcatcaactctcgaatcttct |
353 |
Q |
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| T |
37190700 |
tatgaagcatgtctttccctcgttccatcccgaccacgtcatcaactcccgaatcttct |
37190758 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 25121332 - 25121403
Alignment:
| Q |
102 |
tcatttgagtttggaataaaacctgaaaaactcgata-caacaactctacatagttacgcagaattccacca |
172 |
Q |
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| T |
25121332 |
tcatctgagtctggaataaaacctgaaaaacccgatagaaacaaccctgtatggttacgcagaattccacca |
25121403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 25121469 - 25121529
Alignment:
| Q |
232 |
gttgttgttccattttatgtatcgatcaacgttaacggcagaagcaatagaagaaaagcta |
292 |
Q |
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| T |
25121469 |
gttgttgttccattttatgtatcggtcaactgtaacaacataagtagtagaagaaaagcta |
25121529 |
T |
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