View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11170_high_1 (Length: 807)

Name: NF11170_high_1
Description: NF11170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11170_high_1
NF11170_high_1
[»] chr6 (3 HSPs)
chr6 (10-463)||(1664616-1665069)
chr6 (640-788)||(1665238-1665386)
chr6 (492-603)||(1665090-1665201)


Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 10 - 463
Target Start/End: Original strand, 1664616 - 1665069
Alignment:
Q  10 gcagagacatcaaaaacattaatgttgtttcccaaatttgtatatagacaagtgattcttatagaattttatgtaactaattcctattcgttattttgtc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1664616 gcagagacatcaaaaacattaatgttgtttcccaaatttgtatatagacaagtgattcttatagaattttatgtaactaactcctattcgttattttgtc 1664715  T
Q  110 ggnnnnnnncctatttgtttgagttcttatcttgaaatgaaagtataataaaggattgaagagtttgtttgaattaaaattgatgttttagagttaaatt 209  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1664716 gcaaaaaaacctatttgtttgagttcttatcttgaaatgaaagtataataaaggattgaagagtttgtttgaattaaaattgatgttttagagttaaatt 1664815  T
Q  210 ttgcagttttgtcaactatgtcaagtacttgttattgtgattttatttgtccatattttctgctctttttcattgtaaaattaagttagacatgagtcca 309  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1664816 ttgcagttttctcaactatgtcaagtacttgttattgtgattttatttgtccatattttctgctctttttcattgtaaaattaagttagacatgagtcca 1664915  T
Q  310 aactttgctgtcttttatttccatgagttctttaaagaaccatggaagttgatagacttcggttatttttatcgatcgtggaccaccgcaattttggaac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1664916 aactttgctgtcttttatttccatgagttctttaaagaaccatggaagttgatagacttcggttatttttatcgatcgtggaccaccgcaattttggaac 1665015  T
Q  410 tttgtagatcaaaatttaaaaatcatgtgattcacaagattaagtatcatttac 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1665016 tttgtagatcaaaatttaaaaatcatgtgattcacaagattaagtatcatttac 1665069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 640 - 788
Target Start/End: Original strand, 1665238 - 1665386
Alignment:
Q  640 ttgtcttgtaatgacatgtccttatgatgcctcatacatttctgactcttaaaaaatattcatcaataatacttatcccctttgtaagttttcatgtttt 739  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1665238 ttgtcttgtaatgacatgtccttatgatgcctcatacatttctgactcataaaaaatattcatcaataatacttatcccctttgtaagttttcatgtttt 1665337  T
Q  740 tcatgatgttctaaacaaaacattattatcttaaggttgatggatgcta 788  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1665338 tcatgatgttctaaacagaacattattatcttaaggttgatggatgcta 1665386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 492 - 603
Target Start/End: Original strand, 1665090 - 1665201
Alignment:
Q  492 agaattcacaagaaccacttgactcgacagttgtgtccatgaacatcattattcttcttgccttttttgaactttcatgtgtttttgtttattactgata 591  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  1665090 agaattcacaagaaccacttgacttgacagttgtgtccatgaacatcattattcttctttccttttttgaactttcatgtgtttttgtttattgctgata 1665189  T
Q  592 gacacctgattg 603  Q
    ||||||||||||    
T  1665190 gacacctgattg 1665201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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