View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11170_high_13 (Length: 280)
Name: NF11170_high_13
Description: NF11170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11170_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 45271254 - 45270993
Alignment:
| Q |
1 |
ttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
45271254 |
ttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaattt |
45271155 |
T |
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| Q |
101 |
aaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271154 |
aaaaccatccaggctgctcttgcctcttaccctaagggaaacaaagacagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcc |
45271055 |
T |
|
| Q |
201 |
ccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcactggt |
262 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45271054 |
ccaaggaggctgttaacattcttatgtatggtgatggccctgcaaagaccattgtcactggt |
45270993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 45283028 - 45282767
Alignment:
| Q |
1 |
ttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaattt |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
45283028 |
ttcttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattatgcctaatgctgttgttgccaaggatggtagcggccaattt |
45282929 |
T |
|
| Q |
101 |
aaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcc |
200 |
Q |
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| T |
45282928 |
aaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcc |
45282829 |
T |
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| Q |
201 |
ccaaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcactggt |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45282828 |
ccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcactggt |
45282767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 258
Target Start/End: Complemental strand, 45274785 - 45274530
Alignment:
| Q |
3 |
cttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaatttaa |
102 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
45274785 |
cttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaatttaa |
45274686 |
T |
|
| Q |
103 |
aaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcccc |
202 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
45274685 |
aaccatccaggctgctcttgcctcttatcctaagggaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaatacatcactgtaccc |
45274586 |
T |
|
| Q |
203 |
aaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgtcac |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45274585 |
aaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcac |
45274530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 3 - 255
Target Start/End: Complemental strand, 45294414 - 45294162
Alignment:
| Q |
3 |
cttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaatttaa |
102 |
Q |
| |
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|||||| |||||||||||||||||||||| || |||| |||||||||| |||| || || |||||| |||||||||||||||||||||||| |||||||| |
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| T |
45294414 |
cttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaa |
45294315 |
T |
|
| Q |
103 |
aaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcccc |
202 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||| |||||||||||| | ||| |
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| T |
45294314 |
aaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattccc |
45294215 |
T |
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| Q |
203 |
aaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgt |
255 |
Q |
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|| || |||||||||||||||||||||||||||||||| | ||| |||||||| |
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| T |
45294214 |
aaagacgctgttaacattcttatgtatggtgatggccccggaaagaccattgt |
45294162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 3 - 255
Target Start/End: Complemental strand, 45303374 - 45303122
Alignment:
| Q |
3 |
cttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaatttaa |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||| || |||| |||||||||| |||| || || |||||| |||||||||||||||||||||||| |||||||| |
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| T |
45303374 |
cttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaa |
45303275 |
T |
|
| Q |
103 |
aaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcccc |
202 |
Q |
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|||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||| |||||||||||| | ||| |
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| T |
45303274 |
aaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattccc |
45303175 |
T |
|
| Q |
203 |
aaggatgctgttaacattcttatgtatggtgatggccctgcaaaaaccattgt |
255 |
Q |
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|| || |||||||||||||||||||||||||||||||| | ||| |||||||| |
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| T |
45303174 |
aaagacgctgttaacattcttatgtatggtgatggccccggaaagaccattgt |
45303122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 38588302 - 38588231
Alignment:
| Q |
124 |
ctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcac |
195 |
Q |
| |
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|||||| ||||||||| |||||||||||| ||||||| || ||||| || ||||||||||| |||||||| |
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| T |
38588302 |
ctcttatcctaagggattcaaaggcagatacattatctatgtcaaggctggggtctatgacgagtacatcac |
38588231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 38583289 - 38583244
Alignment:
| Q |
144 |
aaggcagatatgttatctacgttaaggccggtgtctatgacgaata |
189 |
Q |
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|||| |||||||| |||||||| ||||| ||||||||||||||||| |
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| T |
38583289 |
aaggtagatatgtcatctacgtcaaggctggtgtctatgacgaata |
38583244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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