View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11170_high_9 (Length: 405)
Name: NF11170_high_9
Description: NF11170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11170_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 45303268 - 45303647
Alignment:
| Q |
1 |
cattatttctttctctctctaatgtagatgagttttgatgtcgaaaaattattttgcgtaaactaaatcaaagtgaaatatatatcatcacaattcataa |
100 |
Q |
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| T |
45303268 |
cattatttctttctctctctaatgcagatgagttttgatgtcgaaaaattattttgcgtaaactaaatcaaagtgaaatat----catcacaattcatag |
45303363 |
T |
|
| Q |
101 |
ctattatccagccacacacatatggttgacaatgtaaattaaacaatcatgcattagggcacgtaagaagatctatctggagttggccaaactgtcttgg |
200 |
Q |
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| T |
45303364 |
ctattatcca----cacacatatggttgacaatgtaaattaaacaatcatgcattagggcacgtaagaagatctatctggagttggccaaactgtcttgg |
45303459 |
T |
|
| Q |
201 |
tgtacttggacagacattccaataatttagccaaattta-tattccgtcaaattcgagatttcgaggattagctagtggtacggaattggtcaattttca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45303460 |
tgtacttggacagacattccaataatttagccaaattttctattccgtcaaattcgagatttcgaggattagctagtagtacggaattggtcaattttca |
45303559 |
T |
|
| Q |
300 |
tttcaatcatgaagtcatccaacggtgactcttttaggaaattctagactattccaggtatccgtccacgtacttagacctacatgag |
387 |
Q |
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| T |
45303560 |
tttcaatcatgaagtcatccaacggtgactcttttaggaaattctagactatttcaggtatccgtccacgtacttagacctacatgag |
45303647 |
T |
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