View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11170_low_11 (Length: 343)

Name: NF11170_low_11
Description: NF11170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11170_low_11
NF11170_low_11
[»] chr5 (7 HSPs)
chr5 (88-325)||(16487294-16487531)
chr5 (139-244)||(42835176-42835281)
chr5 (28-91)||(36904145-36904208)
chr5 (269-325)||(40415217-40415273)
chr5 (186-270)||(24654805-24654889)
chr5 (199-263)||(29417496-29417560)
chr5 (197-253)||(37409049-37409105)
[»] chr6 (1 HSPs)
chr6 (26-91)||(28105863-28105928)
[»] scaffold0134 (1 HSPs)
scaffold0134 (205-255)||(16974-17024)
[»] chr1 (1 HSPs)
chr1 (197-251)||(34287770-34287824)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 88 - 325
Target Start/End: Original strand, 16487294 - 16487531
Alignment:
Q  88 tgggatgcacaaaacagacacagagttccacaaacgctgccagatcctaatatattaaaaccagaatcatactccgtttgatcccgatatataggatcta 187  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16487294 tgggatgcacaaaacagacacagagttccaagaacgctgccagatcctaatatattaaaaccagaatcatactccgtttgatcccgatatataggatcta 16487393  T
Q  188 atttgacacttggccagtctaatttgaccctattctcaaacctcttaccagcaagagaatacaaatcaaatgtttcatcgtgataataaccctcaaaagg 287  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16487394 atttgacacttggccaatctaatttgatcctattctcaaacctcttaccagcaagagaatacaaatcaaatgtttcatcgtgataataaccctcaaaagg 16487493  T
Q  288 agaaaatgtttgatgtagtagaaaagacgtatcatgat 325  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16487494 agaaaatgtttgatgtagtagaaaagacgtatcatgat 16487531  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 42835176 - 42835281
Alignment:
Q  139 atattaaaaccagaatcatactccgtttgatcccgatatataggatctaatttgacacttggccagtctaatttgaccctattctcaaacctcttaccag 238  Q
    ||||||||||| |||||||||||   || || | ||||||| |||||||| |||||||||||||| ||||| |||||||| ||||||||||||| |||||    
T  42835176 atattaaaaccggaatcatactcttctttatgcagatatatcggatctaacttgacacttggccaatctaagttgacccttttctcaaacctctcaccag 42835275  T
Q  239 caagag 244  Q
     |||||    
T  42835276 aaagag 42835281  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 36904208 - 36904145
Alignment:
Q  28 cgaagggaaaagtgtgaaaaacgaaggaggaaagcacaccggagttatgccggaagtggttggg 91  Q
    ||||| ||||||||||||||| ||| | ||||||||||||||||||| | ||||||||||||||    
T  36904208 cgaagagaaaagtgtgaaaaatgaaaggggaaagcacaccggagttacgtcggaagtggttggg 36904145  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 40415273 - 40415217
Alignment:
Q  269 gataataaccctcaaaaggagaaaatgtttgatgtagtagaaaagacgtatcatgat 325  Q
    |||||||||| |||||||||| |||||||||||||||||||| ||||  ||||||||    
T  40415273 gataataaccatcaaaaggagtaaatgtttgatgtagtagaacagacacatcatgat 40415217  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 24654889 - 24654805
Alignment:
Q  186 taatttgacacttggccagtctaatttgaccctattctcaaacctcttaccagcaagagaatacaaatcaaatgtttcatcgtga 270  Q
    |||||||| | ||||||| |||||||||||| |||| ||||| |||  ||| | || ||||||||| |||||||| |||||||||    
T  24654889 taatttgatatttggccaatctaatttgaccttattttcaaaactcgaaccggaaacagaatacaactcaaatgtatcatcgtga 24654805  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 29417496 - 29417560
Alignment:
Q  199 ggccagtctaatttgaccctattctcaaacctcttaccagcaagagaatacaaatcaaatgtttc 263  Q
    ||||| |||||||||||| ||||||||||||||  ||| | || ||||||||| |||||||||||    
T  29417496 ggccaatctaatttgaccttattctcaaacctcgaaccggaaacagaatacaactcaaatgtttc 29417560  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 37409049 - 37409105
Alignment:
Q  197 ttggccagtctaatttgaccctattctcaaacctcttaccagcaagagaatacaaat 253  Q
    ||||||| |||| |||||| ||||||||||||||||  || | ||||||||||||||    
T  37409049 ttggccaatctagtttgactctattctcaaacctctcgcccgaaagagaatacaaat 37409105  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 28105863 - 28105928
Alignment:
Q  26 aacgaagggaaaagtgtgaaaaacgaaggaggaaagcacaccggagttatgccggaagtggttggg 91  Q
    ||||||| |||||||||||||||  |||| ||||| ||||||||||||| |||||| |||||||||    
T  28105863 aacgaagagaaaagtgtgaaaaataaagggggaaatcacaccggagttacgccggacgtggttggg 28105928  T

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Target: scaffold0134 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 16974 - 17024
Alignment:
Q  205 tctaatttgaccctattctcaaacctcttaccagcaagagaatacaaatca 255  Q
    |||||||||||| ||||||||||||||| ||||| ||||||||| ||||||    
T  16974 tctaatttgaccttattctcaaacctctcaccagaaagagaataaaaatca 17024  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 34287824 - 34287770
Alignment:
Q  197 ttggccagtctaatttgaccctattctcaaacctcttaccagcaagagaatacaa 251  Q
    ||||||| |||||||||||| |||| |||||||||| || || ||||||||||||    
T  34287824 ttggccaatctaatttgaccttattatcaaacctctcactagaaagagaatacaa 34287770  T

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