View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11170_low_12 (Length: 341)

Name: NF11170_low_12
Description: NF11170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11170_low_12
NF11170_low_12
[»] chr6 (2 HSPs)
chr6 (17-223)||(31847686-31847892)
chr6 (252-334)||(17099198-17099280)
[»] chr5 (2 HSPs)
chr5 (252-335)||(36098709-36098792)
chr5 (252-335)||(22313657-22313740)
[»] scaffold0077 (2 HSPs)
scaffold0077 (252-335)||(48687-48770)
scaffold0077 (252-335)||(58442-58525)
[»] scaffold0003 (2 HSPs)
scaffold0003 (233-335)||(208230-208332)
scaffold0003 (252-335)||(213301-213384)
[»] chr8 (1 HSPs)
chr8 (252-334)||(29640729-29640811)
[»] chr3 (1 HSPs)
chr3 (252-335)||(41931793-41931876)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 31847892 - 31847686
Alignment:
Q  17 acttatcaacaaggtgatggtaaaatatgaaaaattcaaaattgcacgggtacatattcctttgtttttacaaaagttattttcaaacattgtccaaatt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  31847892 acttatcaacaaggtcatggtaaaatatgaaaaattcaaaattgcacgggtacatatgcctttgtttttacaaaagttattttcaaacatcgtccaaatt 31847793  T
Q  117 acaagggttattaaagatattgacccttaaacttatggtttgagataatggttggattatgcttcctgggaaaacttctcagttgtttagtgattcaaca 216  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  31847792 acaaaggttagtaaagatattgacccttaaacttatggtttgagataatggttggattatgcttcctgtgaaaactcctcagttgtttagtgattcaaca 31847693  T
Q  217 tggtatt 223  Q
    |||||||    
T  31847692 tggtatt 31847686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 17099280 - 17099198
Alignment:
Q  252 cttctagacaattcttgttgcctctgctcggtgctcatattttatctccaatttctggcattttgtgttcgtctttccctttg 334  Q
    |||||||||||||||||||| || |||||||||||||||||||  |||  |||||| |||||||| |||||||||||||||||    
T  17099280 cttctagacaattcttgttgtctttgctcggtgctcatattttgcctctgatttcttgcattttgagttcgtctttccctttg 17099198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 335
Target Start/End: Original strand, 36098709 - 36098792
Alignment:
Q  252 cttctagacaattcttgttgcctctgctcggtgctcatattttatctccaatttctggcattttgtgttcgtctttccctttgc 335  Q
    |||||||||||||||||||| || |||||||||||||||||||  ||||||||||| |||||||| ||||||||| ||||||||    
T  36098709 cttctagacaattcttgttgtctttgctcggtgctcatattttccctccaatttcttgcattttgagttcgtcttaccctttgc 36098792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 252 - 335
Target Start/End: Original strand, 22313657 - 22313740
Alignment:
Q  252 cttctagacaattcttgttgcctctgctcggtgctcatattttatctccaatttctggcattttgtgttcgtctttccctttgc 335  Q
    |||||||||||||||||||| || |||| ||||||||||||||  |||| |||||| |||||||| ||||||||||||||||||    
T  22313657 cttctagacaattcttgttgtctttgcttggtgctcatattttgcctccgatttcttgcattttgagttcgtctttccctttgc 22313740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 252 - 335
Target Start/End: Original strand, 48687 - 48770
Alignment:
Q  252 cttctagacaattcttgttgcctctgctcggtgctcatattttatctccaatttctggcattttgtgttcgtctttccctttgc 335  Q
    |||||||||||||||||||| || || ||||||||||||||||  |||| |||||| |||||||| ||||||||||||||||||    
T  48687 cttctagacaattcttgttgtctttgatcggtgctcatattttgcctccgatttcttgcattttgagttcgtctttccctttgc 48770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 252 - 335
Target Start/End: Original strand, 58442 - 58525
Alignment:
Q  252 cttctagacaattcttgttgcctctgctcggtgctcatattttatctccaatttctggcattttgtgttcgtctttccctttgc 335  Q
    |||||||||||||||||||| || || ||||||||||||||||  |||| |||||| |||||||| ||||||||||||||||||    
T  58442 cttctagacaattcttgttgtctttgatcggtgctcatattttgcctccgatttcttgcattttgagttcgtctttccctttgc 58525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 335
Target Start/End: Original strand, 208230 - 208332
Alignment:
Q  233 ttgtctacaatttaatcctcttctagacaattcttgttgcctctgctcggtgctcatattttatctccaatttctggcattttgtgttcgtctttccctt 332  Q
    ||||||| |||||  || ||||||||||||||||||||  || ||||||||||| |||||||  |||| |||||| |||||||| |||||||||||||||    
T  208230 ttgtctataatttgttcgtcttctagacaattcttgttctctttgctcggtgcttatattttgcctccgatttcttgcattttgagttcgtctttccctt 208329  T
Q  333 tgc 335  Q
    |||    
T  208330 tgc 208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 335
Target Start/End: Original strand, 213301 - 213384
Alignment:
Q  252 cttctagacaattcttgttgcctctgctcggtgctcatattttatctccaatttctggcattttgtgttcgtctttccctttgc 335  Q
    |||||||||||||||||||  || |||||   |||||||||||  |||| |||||| |||||||| ||||||||||||||||||    
T  213301 cttctagacaattcttgttctctttgctcatggctcatattttgcctccgatttcttgcattttgagttcgtctttccctttgc 213384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 29640729 - 29640811
Alignment:
Q  252 cttctagacaattcttgttgcctctgctcggtgctcatattttatctccaatttctggcattttgtgttcgtctttccctttg 334  Q
    |||||||| ||||||||||| || |||||||||||||||||||  |||| |||||| |||||||| |||||||||||||||||    
T  29640729 cttctagataattcttgttgtctttgctcggtgctcatattttgcctccgatttcttgcattttgagttcgtctttccctttg 29640811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 41931876 - 41931793
Alignment:
Q  252 cttctagacaattcttgttgcctctgctcggtgctcatattttatctccaatttctggcattttgtgttcgtctttccctttgc 335  Q
    |||||||||||||||||||  || |||||||||||||||||||  |||  |||||| |||||||| ||||||||||||||||||    
T  41931876 cttctagacaattcttgttctctttgctcggtgctcatattttgcctcggatttcttgcattttgagttcgtctttccctttgc 41931793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University