View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11170_low_2 (Length: 589)
Name: NF11170_low_2
Description: NF11170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11170_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Complemental strand, 2462467 - 2461929
Alignment:
| Q |
18 |
attaattgttcaattgctggttttggtcgtttctgctactaaaaataagccaaagtatttatataaaccaacaaaactaagcttttaagtaaacaaaaca |
117 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462467 |
attaattgttgaattgctggttttggtcatttctgctactaacaataagccaaagtatttatataaaccaacaaaactaagcttttaagtaaacaaaaca |
2462368 |
T |
|
| Q |
118 |
atcttgnnnnnnnnnnnnncagacaacacaatttcaagacatcatgatgaaattaaatatgatataatcaaaacaacaaaaactttgtttatttatatgc |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
2462367 |
atcttgaaaaaaagaaaaacagacaacacaatttcaagacatcatgatgaaattaaatatgata--atcataacaacaaaaactttgtttatttatatgc |
2462270 |
T |
|
| Q |
218 |
aattcattgatatattaatcataacaacaaattttgttgtacacctgacatatttaagtcaaataaactttcttatttatgtcaaattgggtgcaatgca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462269 |
aattcattgatatattaatcataacaacaaattttgttgtacacctgacatatttaagtcaaataaactttcttatttatgtcaaattgggtgcaatgca |
2462170 |
T |
|
| Q |
318 |
ggttagagcacttattcccatccctgatgtagcaccatccaccccatgcgtgattcgcgacaatgtaataacagagcagttaagaagattctgtgtctcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462169 |
ggttagagcacttattcccatccctgatgtagcaccatccaccccatgcgtgattcgcgacaatgtaataacagagcagttaagaagattctgtgtctcc |
2462070 |
T |
|
| Q |
418 |
atcacgtcaatgttcctccatttctgggacaaaatttattggcaccccattgggatactgttgcatcaccaaaacagatgctgttgtccgaaaatcttgt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462069 |
atcacgtcaatgttcctccatttctgggacaaaatttattggcaccccattgggatactgttgcatcaccaaaacagatgctgttgtccgaaaatcttgt |
2461970 |
T |
|
| Q |
518 |
gatgccaataagccaccaacaggtcctaattccgggcactc |
558 |
Q |
| |
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| T |
2461969 |
gatgccaataagccaccaacaggtcctaattccgggcactc |
2461929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 61 - 558
Target Start/End: Complemental strand, 2451397 - 2450919
Alignment:
| Q |
61 |
aataagccaaagtatttatataaaccaacaaaactaagcttttaagtaaacaaaacaatcttgnnnnnnnnnnnnncagacaacacaatttcaagacatc |
160 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
2451397 |
aataagccagcgtatttatataaaccaacaaaactaagcatttaaataaacaaaacaattttgaaaaaaagaaaaatagacaacacaatttcaagacatc |
2451298 |
T |
|
| Q |
161 |
atgatgaaa-ttaaatatgatataatcaaaacaacaaaaactttgtttatttatatgcaattcattgatatattaatcataacaacaaattttgttgtac |
259 |
Q |
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||||||||| |||||||||||| |||| |||||||||| ||||| |||||||||| |||||||| |||| ||| ||||||| |
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| T |
2451297 |
atgatgaaaattaaatatgata--atcataacaacaaaatctttgattatttatattcaattcatagataaatt------------------tgttgtaa |
2451218 |
T |
|
| Q |
260 |
acctgacatatttaagtcaaataaactttcttatttatgtcaaattgggtgcaatgcaggttagagcacttattcccatccctgatgtagcaccatccac |
359 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| | |||| |||||||||||||||| |
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| T |
2451217 |
acctaacaaatttaagtcaaataaactttcttatttatgtcgaattgggtacaatgcaggttagaacacttattccaaacccttatgtagcaccatccac |
2451118 |
T |
|
| Q |
360 |
cccatgcgtgattcgcgacaatgtaataacagagcagttaagaagattctgtgtctccatcacgtcaatgttcctccatttctgggacaaaatttattgg |
459 |
Q |
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|||||||| |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
2451117 |
cccatgcgcgattcgggacaatgtaaaaacagagcagttaagaagattccgtgtctccatcacgtgaatgttcctccatttctgggacaaagtttattgg |
2451018 |
T |
|
| Q |
460 |
caccccattgggatactgttgcatcaccaaaacagatgctgttgtccgaaaatcttgtgatgccaataagccaccaacaggtcctaattccgggcactc |
558 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
2451017 |
caccccattgtgatactgttgcatcaccaaaacagatgctgttgtgcggaaatcttgtgatgccaacaagccaccaacaggtcctaattctgggcactc |
2450919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 426 - 559
Target Start/End: Complemental strand, 2446284 - 2446151
Alignment:
| Q |
426 |
aatgttcctccatttctgggacaaaatttattggcaccccattgggatactgttgcatcaccaaaacagatgctgttgtccgaaaatcttgtgatgccaa |
525 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| | ||||||| ||| ||| |
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| T |
2446284 |
aatgttcctccatttctgggacaaaattcattggcaccccattatgatactgttgcatcaccaaaaccgatgctgttgtggggcaatcttgggatatcaa |
2446185 |
T |
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| Q |
526 |
taagccaccaacaggtcctaattccgggcactcc |
559 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |
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| T |
2446184 |
caagccaccaacaggtcctagttccgggcactcc |
2446151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 250 - 341
Target Start/End: Complemental strand, 2446447 - 2446356
Alignment:
| Q |
250 |
tttgttgtacacctgacatatttaagtcaaataaactttcttatttatgtcaaattgggtgcaatgcaggttagagcacttattcccatccc |
341 |
Q |
| |
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||||||| |||||| ||| |||| |||||||||||||||||||||||||| ||| |||| |||||||| ||||| |||||||||||||| |
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| T |
2446447 |
tttgttggacacctaacaaattttagtcaaataaactttcttatttatgtagaatcgggtccaatgcagattagaaatcttattcccatccc |
2446356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 2446547 - 2446496
Alignment:
| Q |
62 |
ataagccaaagtatttatataaaccaacaaaactaagcttttaagtaaacaa |
113 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
2446547 |
ataagcccaagtatttatataaaccaacaaacataagcttttaagtagacaa |
2446496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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