View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11170_low_4 (Length: 574)

Name: NF11170_low_4
Description: NF11170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11170_low_4
NF11170_low_4
[»] chr4 (11 HSPs)
chr4 (17-556)||(33758952-33759491)
chr4 (494-535)||(30848643-30848684)
chr4 (497-535)||(18508871-18508909)
chr4 (507-552)||(2734179-2734225)
chr4 (495-552)||(12276820-12276878)
chr4 (503-552)||(23151590-23151640)
chr4 (494-535)||(24980676-24980717)
chr4 (507-551)||(40391257-40391302)
chr4 (494-535)||(54235273-54235314)
chr4 (494-554)||(55827292-55827353)
chr4 (495-535)||(3249703-3249743)
[»] chr7 (8 HSPs)
chr7 (494-546)||(23971236-23971288)
chr7 (494-551)||(6803308-6803366)
chr7 (494-552)||(47967913-47967972)
chr7 (495-552)||(18732042-18732099)
chr7 (494-551)||(5026141-5026199)
chr7 (494-535)||(16866452-16866493)
chr7 (494-546)||(30794447-30794500)
chr7 (494-535)||(44816485-44816526)
[»] chr2 (11 HSPs)
chr2 (495-550)||(16180487-16180543)
chr2 (494-552)||(17437177-17437236)
chr2 (495-552)||(2884256-2884314)
chr2 (495-556)||(44726834-44726896)
chr2 (494-550)||(10459268-10459325)
chr2 (494-552)||(31469071-31469130)
chr2 (494-552)||(33829389-33829448)
chr2 (494-546)||(5713276-5713329)
chr2 (494-535)||(11386327-11386368)
chr2 (507-547)||(30517918-30517959)
chr2 (494-535)||(41912128-41912169)
[»] chr1 (7 HSPs)
chr1 (494-548)||(3694038-3694093)
chr1 (507-549)||(35310316-35310359)
chr1 (494-546)||(19758322-19758375)
chr1 (494-535)||(47543617-47543658)
chr1 (494-552)||(3739865-3739924)
chr1 (494-552)||(30693335-30693394)
chr1 (494-530)||(10498377-10498413)
[»] chr5 (10 HSPs)
chr5 (494-547)||(968333-968387)
chr5 (495-552)||(34252717-34252775)
chr5 (495-546)||(19644450-19644502)
chr5 (495-527)||(23344907-23344939)
chr5 (495-554)||(20219495-20219554)
chr5 (495-552)||(9956550-9956608)
chr5 (494-535)||(39030581-39030622)
chr5 (507-547)||(42324944-42324985)
chr5 (498-534)||(14611071-14611107)
chr5 (495-535)||(16500575-16500615)
[»] scaffold2113 (1 HSPs)
scaffold2113 (494-550)||(627-684)
[»] chr6 (12 HSPs)
chr6 (494-554)||(31522659-31522719)
chr6 (494-552)||(8437825-8437884)
chr6 (494-552)||(9829891-9829950)
chr6 (495-552)||(1986204-1986262)
chr6 (498-535)||(2282416-2282453)
chr6 (494-535)||(31323832-31323873)
chr6 (497-547)||(28596080-28596131)
chr6 (494-552)||(35003759-35003818)
chr6 (496-552)||(7343294-7343351)
chr6 (495-551)||(14446697-14446754)
chr6 (495-547)||(24640142-24640195)
chr6 (494-550)||(28004674-28004731)
[»] chr8 (5 HSPs)
chr8 (494-535)||(15114635-15114676)
chr8 (494-542)||(11196268-11196316)
chr8 (495-546)||(44080727-44080779)
chr8 (494-551)||(33557826-33557884)
chr8 (494-535)||(13209982-13210023)
[»] chr3 (9 HSPs)
chr3 (494-535)||(3956176-3956217)
chr3 (494-535)||(26104236-26104277)
chr3 (494-546)||(31280161-31280214)
chr3 (494-548)||(47783082-47783137)
chr3 (494-535)||(32221521-32221562)
chr3 (494-535)||(40955796-40955837)
chr3 (495-535)||(26914501-26914541)
chr3 (495-535)||(40905820-40905860)
chr3 (507-554)||(46829106-46829154)


Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 556
Target Start/End: Original strand, 33758952 - 33759491
Alignment:
17 gaccagagttagaacttcagacaccccgttattcaccnnnnnnntatgaatttctagccactagaccgcttnnnnnnngttcaactttcttatagattgg 116  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||       ||||||||||||||||||||||    
33758952 gaccagagttagaacttcagacaccccgttattcaccaaaaaaatatgaatttctagccactagaccgcttaaaaaaagttcaactttcttatagattgg 33759051  T
117 tttgggtctcttaacatgtaaatttggacaacaatgaggtgtagattaattcttcaagcatcattttgtatgttgtgttgttgaatcaaaaccctgtgtt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
33759052 tttgggtctcttaacatgtaaatttggacaacaatgaggtgtagattaattcttcaagcatcattttgtatgttgtgttgttgaatcaaaaccctgcgtt 33759151  T
217 ggatctcttctctatctgtttgatgtttattcatttaatgactacgtgggtttgtctgtgaaatctatttttagttatagttggtctaaaaaattcatca 316  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33759152 ggatctcttctctatttgtttggtgtttattcatttaatgactacgtgggtttgtctgtgaaatctatttttagttatagttggtctaaaaaattcatca 33759251  T
317 cacaatttctttatcgtgtgtgaccagtgttcataccaatacttgtatccgtcttcacatttattttattgcgttaatgcatgtaacttatgaacaatgt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33759252 cacaatttctttatcgtgtgtgaccagtgttcataccaatacttgtatccgtcttcacatttattttattgcgttaatgcatgtaacttatgaacaatgt 33759351  T
417 atcttttctaatgaaattttggttttaattgataagtataaatgttagtgactttctagttgtaacaaaccataagtcaaattttgaactaaatacatta 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33759352 atcttttctaatgaaattttggttttaattgataagtataaatgttagtgactttctagttgtaacaaaccataagtcaaattttgaactaaatacatta 33759451  T
517 atttttgttgaccaattttacttatattttgggacgaaat 556  Q
    ||||||||||||||||||||||||||||||||||||||||    
33759452 atttttgttgaccaattttacttatattttgggacgaaat 33759491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 494 - 535
Target Start/End: Original strand, 30848643 - 30848684
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||||||| |||||||||||||||||||||||||||||    
30848643 caaattttgaacaaaatacattaatttttgttgaccaatttt 30848684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 535
Target Start/End: Original strand, 18508871 - 18508909
Alignment:
497 attttgaactaaatacattaatttttgttgaccaatttt 535  Q
    ||||||||||||||||||||| |||||||||||||||||    
18508871 attttgaactaaatacattaacttttgttgaccaatttt 18508909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 552
Target Start/End: Complemental strand, 2734225 - 2734179
Alignment:
507 aaatacattaatttttgttgaccaatttt-acttatattttgggacg 552  Q
    ||||||||||| |||||||||| |||||| |||||||||||||||||    
2734225 aaatacattaacttttgttgactaatttttacttatattttgggacg 2734179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 552
Target Start/End: Complemental strand, 12276878 - 12276820
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaat-tttacttatattttgggacg 552  Q
    ||||||||||  ||||||||||| ||||| |||||||| |||||||||||||| |||||    
12276878 aaattttgaatcaaatacattaacttttgctgaccaatctttacttatattttaggacg 12276820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 552
Target Start/End: Original strand, 23151590 - 23151640
Alignment:
503 aactaaatacattaatttttgttgaccaattttac-ttatattttgggacg 552  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||| ||||    
23151590 aactaaatacattaatttttgttgatcaatttttctttatattttgagacg 23151640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Original strand, 24980676 - 24980717
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    ||||||||| || |||||||||||||||||||||| ||||||    
24980676 caaattttgtacaaaatacattaatttttgttgacaaatttt 24980717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 551
Target Start/End: Complemental strand, 40391302 - 40391257
Alignment:
507 aaatacattaatttttgttga-ccaattttacttatattttgggac 551  Q
    ||||||||||||||||||||| | | ||||||||||||||||||||    
40391302 aaatacattaatttttgttgatcgatttttacttatattttgggac 40391257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Original strand, 54235273 - 54235314
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||||||| ||||||||||| ||||||||| |||||||    
54235273 caaattttgaaccaaatacattaacttttgttgagcaatttt 54235314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 554
Target Start/End: Original strand, 55827292 - 55827353
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggacgaa 554  Q
    |||| ||| ||| ||||| ||||| ||||||||||||| |||| ||||||||||||||||||    
55827292 caaaattttaaccaaatatattaacttttgttgaccaatttttgcttatattttgggacgaa 55827353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 535
Target Start/End: Complemental strand, 3249743 - 3249703
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    ||||||||||| ||||||||||| |||||| ||||||||||    
3249743 aaattttgaaccaaatacattaacttttgtcgaccaatttt 3249703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 494 - 546
Target Start/End: Original strand, 23971236 - 23971288
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaattttacttatatttt 546  Q
    |||||||||||||||||| ||| ||||||||||||||||||| ||||||||||    
23971236 caaattttgaactaaatatatttatttttgttgaccaatttttcttatatttt 23971288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 6803366 - 6803308
Alignment:
494 caaattttgaactaaatacattaatttttgttgacc-aattttacttatattttgggac 551  Q
    |||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||    
6803366 caaattttaaactaaatacattaacttttgttgaccaaattttgcttatattttgggac 6803308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 47967972 - 47967913
Alignment:
494 caaattttgaactaaatacattaatttttgttgacc-aattttacttatattttgggacg 552  Q
    |||||||| |||||||||||| |||||||||||||| ||||||  |||||||||||||||    
47967972 caaattttaaactaaatacataaatttttgttgaccgaattttgtttatattttgggacg 47967913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 495 - 552
Target Start/End: Original strand, 18732042 - 18732099
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaattttacttatattttgggacg 552  Q
    ||||||||||| ||||||||||| |||| |||||||||||| |||| ||||| |||||    
18732042 aaattttgaaccaaatacattaacttttattgaccaatttttcttacattttaggacg 18732099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 5026199 - 5026141
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttta-cttatattttgggac 551  Q
    ||||||||| |||||||| ||||| ||||||| |||||||||  |||||||||||||||    
5026199 caaattttggactaaatatattaacttttgttaaccaatttttgcttatattttgggac 5026141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Original strand, 16866452 - 16866493
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||| ||| ||||||||||| |||||||||||||||||    
16866452 caaatttttaaccaaatacattaacttttgttgaccaatttt 16866493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 546
Target Start/End: Complemental strand, 30794500 - 30794447
Alignment:
494 caaattttgaactaaatacattaatttttgttgacc-aattttacttatatttt 546  Q
    |||||||||||  ||||| ||||| ||||||||||| |||||||||||||||||    
30794500 caaattttgaatcaaatatattaaattttgttgaccaaattttacttatatttt 30794447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 44816526 - 44816485
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||||||| ||||||||||| |||||||| ||||||||    
44816526 caaattttgaaccaaatacattaacttttgttggccaatttt 44816485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 495 - 550
Target Start/End: Original strand, 16180487 - 16180543
Alignment:
495 aaattttgaactaaatacattaatttttgttgacc-aattttacttatattttggga 550  Q
    ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
16180487 aaattttgaaccaaatacattaacttttgttgaccaaattttacttatattttggga 16180543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 494 - 552
Target Start/End: Original strand, 17437177 - 17437236
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggacg 552  Q
    ||||||||||||||||||||||||||||||||||| || ||||  |||||||||||||||    
17437177 caaattttgaactaaatacattaatttttgttgacaaatttttgtttatattttgggacg 17437236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 495 - 552
Target Start/End: Complemental strand, 2884314 - 2884256
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggacg 552  Q
    ||||||||||| |||||||||||||||||||||| || ||||||||||||||| |||||    
2884314 aaattttgaaccaaatacattaatttttgttgacaaatttttacttatattttaggacg 2884256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 495 - 556
Target Start/End: Original strand, 44726834 - 44726896
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggacgaaat 556  Q
    ||||||| ||||||||||||||||||||||||| ||| |||| |||||||||| |||||||||    
44726834 aaattttaaactaaatacattaatttttgttgatcaattttttcttatatttttggacgaaat 44726896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 494 - 550
Target Start/End: Complemental strand, 10459325 - 10459268
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttggga 550  Q
    |||||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||||    
10459325 caaattttgaaccaaatacattaacttttgttgaccaatttttgcttatattttggga 10459268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 31469130 - 31469071
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggacg 552  Q
    |||||||| ||| ||||||||||| ||||||||||||| |||| ||||||||||||||||    
31469130 caaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattttgggacg 31469071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 33829448 - 33829389
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggacg 552  Q
    ||||||||| || ||||| ||||||||||||||||||| ||||  |||||||||||||||    
33829448 caaattttgtaccaaatatattaatttttgttgaccaatttttgtttatattttgggacg 33829389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 546
Target Start/End: Original strand, 5713276 - 5713329
Alignment:
494 caaattttgaactaaatacattaatttttgttgacc-aattttacttatatttt 546  Q
    ||||||||||| ||||||| |||||||| ||||||| ||||||| |||||||||    
5713276 caaattttgaattaaatacgttaattttggttgaccaaattttatttatatttt 5713329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 11386368 - 11386327
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    ||||||||||| |||||| ||||||||||||||| |||||||    
11386368 caaattttgaattaaatatattaatttttgttgatcaatttt 11386327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 547
Target Start/End: Original strand, 30517918 - 30517959
Alignment:
507 aaatacattaatttttgttgaccaa-ttttacttatattttg 547  Q
    |||||||||||||||||||||| || ||||||||||||||||    
30517918 aaatacattaatttttgttgacaaatttttacttatattttg 30517959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Original strand, 41912128 - 41912169
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||||||| | ||||||||||||||||||| |||||||    
41912128 caaattttgaaccagatacattaatttttgttgaacaatttt 41912169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 494 - 548
Target Start/End: Original strand, 3694038 - 3694093
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaattt-tacttatattttgg 548  Q
    |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||    
3694038 caaattttgaatcaaatacattaatttttgttgaccaatttctacttatattttgg 3694093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 507 - 549
Target Start/End: Original strand, 35310316 - 35310359
Alignment:
507 aaatacattaatttttgttgaccaa-ttttacttatattttggg 549  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
35310316 aaatacattaatttttgttgaccaatttttacttatattttggg 35310359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 546
Target Start/End: Original strand, 19758322 - 19758375
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatatttt 546  Q
    |||||| | ||||||||||||||| ||||||||||||| |||||||||||||||    
19758322 caaattataaactaaatacattaacttttgttgaccaatttttacttatatttt 19758375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 47543658 - 47543617
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
47543658 caaattttgaaccaaattcattaatttttgttgaccaatttt 47543617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 552
Target Start/End: Original strand, 3739865 - 3739924
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggacg 552  Q
    |||||||| ||| ||||||||||| ||||||||||||| |||| |||||||||| |||||    
3739865 caaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattttaggacg 3739924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 30693394 - 30693335
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggacg 552  Q
    |||||||||||  ||||||||||||||||||||| ||| ||||| ||||||||| |||||    
30693394 caaattttgaatcaaatacattaatttttgttgatcaatttttatttatattttcggacg 30693335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 530
Target Start/End: Original strand, 10498377 - 10498413
Alignment:
494 caaattttgaactaaatacattaatttttgttgacca 530  Q
    |||||||| ||||||||| ||||||||||||||||||    
10498377 caaattttaaactaaatatattaatttttgttgacca 10498413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 494 - 547
Target Start/End: Original strand, 968333 - 968387
Alignment:
494 caaattttgaactaaatacattaatttttgttgac-caattttacttatattttg 547  Q
    |||||||||||||||||| |||||||||||||||| || ||||||||||||||||    
968333 caaattttgaactaaatatattaatttttgttgactcatttttacttatattttg 968387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 552
Target Start/End: Complemental strand, 34252775 - 34252717
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggacg 552  Q
    ||||||||||| ||||||||||| ||||||||||||| |||| |||| |||||||||||    
34252775 aaattttgaaccaaatacattaacttttgttgaccaatttttgcttacattttgggacg 34252717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 546
Target Start/End: Original strand, 19644450 - 19644502
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaatt-ttacttatatttt 546  Q
    ||||||||||| |||||| |||||||||||||| ||||| |||||||||||||    
19644450 aaattttgaaccaaatacgttaatttttgttgatcaattcttacttatatttt 19644502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 527
Target Start/End: Complemental strand, 23344939 - 23344907
Alignment:
495 aaattttgaactaaatacattaatttttgttga 527  Q
    |||||||||||||||||||||||||||||||||    
23344939 aaattttgaactaaatacattaatttttgttga 23344907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 554
Target Start/End: Complemental strand, 20219554 - 20219495
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaattttacttatattttgggacgaa 554  Q
    ||||||||||  ||||| ||||| ||||||||| |||||||||||| ||||| |||||||    
20219554 aaattttgaatcaaatatattaacttttgttgatcaattttacttacattttaggacgaa 20219495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 552
Target Start/End: Original strand, 9956550 - 9956608
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggacg 552  Q
    ||||||||||  ||||||||||| ||||||| ||||| ||||||||| |||||||||||    
9956550 aaattttgaatcaaatacattaacttttgttaaccaatttttacttacattttgggacg 9956608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 39030622 - 39030581
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||| ||| ||||||||||| |||||||||||||||||    
39030622 caaatttttaaccaaatacattaacttttgttgaccaatttt 39030581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 547
Target Start/End: Original strand, 42324944 - 42324985
Alignment:
507 aaatacattaatttttgttgaccaa-ttttacttatattttg 547  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
42324944 aaatacattaacttttgttgaccaatttttacttatattttg 42324985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 14611071 - 14611107
Alignment:
498 ttttgaactaaatacattaatttttgttgaccaattt 534  Q
    ||||||||||||||||| |||||| ||||||||||||    
14611071 ttttgaactaaatacataaattttagttgaccaattt 14611107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 535
Target Start/End: Complemental strand, 16500615 - 16500575
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    ||||||||||| || |||||||||||||||||| |||||||    
16500615 aaattttgaaccaattacattaatttttgttgaacaatttt 16500575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 494 - 550
Target Start/End: Original strand, 627 - 684
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt-acttatattttggga 550  Q
    |||||||||||||||||||| ||| |||||||||| |||||| |||||||||||||||    
627 caaattttgaactaaatacaataacttttgttgactaattttcacttatattttggga 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 554
Target Start/End: Original strand, 31522659 - 31522719
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaattttacttatattttgggacgaa 554  Q
    |||||||||||  |||| |||||| ||||||||||||||||| |||| |||||||||||||    
31522659 caaattttgaatcaaatgcattaacttttgttgaccaattttgcttacattttgggacgaa 31522719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 494 - 552
Target Start/End: Original strand, 8437825 - 8437884
Alignment:
494 caaattttgaactaaatacattaatttttgttgac-caattttacttatattttgggacg 552  Q
    |||||||||||  ||||||||||||||||||||||  |||||||||||||||||| ||||    
8437825 caaattttgaatcaaatacattaatttttgttgactaaattttacttatattttgagacg 8437884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 9829950 - 9829891
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggacg 552  Q
    |||||||| ||| |||||||||||||||||||||| || |||||||||||||| ||||||    
9829950 caaattttaaacaaaatacattaatttttgttgactaatttttacttatatttagggacg 9829891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 552
Target Start/End: Complemental strand, 1986262 - 1986204
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggacg 552  Q
    ||||||| |||||||| ||||||||||| |||||||| ||||||||||||||| |||||    
1986262 aaattttaaactaaatgcattaatttttattgaccaacttttacttatattttaggacg 1986204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 498 - 535
Target Start/End: Complemental strand, 2282453 - 2282416
Alignment:
498 ttttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||||||||||||||| |||||||||||||||||    
2282453 ttttgaactaaatacattaacttttgttgaccaatttt 2282416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 31323873 - 31323832
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
31323873 caaattttgaacaaaatacattaacttttgttgaccaatttt 31323832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 28596131 - 28596080
Alignment:
497 attttgaactaaatacattaatttttgttgaccaa-ttttacttatattttg 547  Q
    ||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||    
28596131 attttgaaccaaatatattaatttttgttgaccaatttttacttacattttg 28596080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 35003818 - 35003759
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggacg 552  Q
    |||||||||||  |||||||||||||||| || ||||| ||||||||||||||| |||||    
35003818 caaattttgaatcaaatacattaatttttattaaccaatttttacttatattttaggacg 35003759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 552
Target Start/End: Original strand, 7343294 - 7343351
Alignment:
496 aattttgaactaaatacattaatttttgttgaccaatttt-acttatattttgggacg 552  Q
    ||||||||| |||||| ||||| ||||||||| ||||||| ||||||||||| |||||    
7343294 aattttgaaataaatatattaacttttgttgatcaatttttacttatattttaggacg 7343351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 551
Target Start/End: Complemental strand, 14446754 - 14446697
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggac 551  Q
    ||||||||||| | ||||||||| ||||||||||||| |||| |||| ||||||||||    
14446754 aaattttgaacaacatacattaacttttgttgaccaacttttgcttacattttgggac 14446697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 547
Target Start/End: Original strand, 24640142 - 24640195
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttg 547  Q
    ||||||||||||||||| ||||| ||||||||| ||| ||||||| ||||||||    
24640142 aaattttgaactaaataaattaacttttgttgatcaacttttactaatattttg 24640195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 550
Target Start/End: Original strand, 28004674 - 28004731
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt-acttatattttggga 550  Q
    |||||||||| | ||||||||||| |||||||||| ||||||  ||||||||||||||    
28004674 caaattttgagccaaatacattaacttttgttgactaattttcccttatattttggga 28004731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 15114676 - 15114635
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||||||  |||||||||||||||||||||||||||||    
15114676 caaattttgaatcaaatacattaatttttgttgaccaatttt 15114635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 542
Target Start/End: Original strand, 11196268 - 11196316
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaattttacttata 542  Q
    ||||||||||| |||||||||||||||||||||| || |||| ||||||    
11196268 caaattttgaattaaatacattaatttttgttgatcagttttgcttata 11196316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 546
Target Start/End: Original strand, 44080727 - 44080779
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaa-ttttacttatatttt 546  Q
    |||||||||  |||||||||||||||||||||| ||| |||||||||||||||    
44080727 aaattttgagttaaatacattaatttttgttgatcaatttttacttatatttt 44080779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 551
Target Start/End: Original strand, 33557826 - 33557884
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgggac 551  Q
    |||||||||||||||||||||||| |||| |||| ||| |||||||||| |||| ||||    
33557826 caaattttgaactaaatacattaacttttattgatcaatttttacttatgttttaggac 33557884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 13210023 - 13209982
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||||||| ||||||||||| ||||||||| |||||||    
13210023 caaattttgaaccaaatacattaacttttgttgatcaatttt 13209982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 3956217 - 3956176
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||| ||||||||||||| |||||||||||||||||||    
3956217 caaattttaaactaaatacatttatttttgttgaccaatttt 3956176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 26104277 - 26104236
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
26104277 caaattttgaactaaatacattagtttttgttaaccaatttt 26104236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 546
Target Start/End: Complemental strand, 31280214 - 31280161
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatatttt 546  Q
    |||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||    
31280214 caaattttgaaccaaatacattaaattttgttgatcaatttttacttatatttt 31280161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 548
Target Start/End: Complemental strand, 47783137 - 47783082
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaa-ttttacttatattttgg 548  Q
    |||||||||||| ||||||||||| |||| |||||||| ||||||||| |||||||    
47783137 caaattttgaaccaaatacattaactttttttgaccaatttttacttacattttgg 47783082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Original strand, 32221521 - 32221562
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||||||| ||||||||||| |||||||||| ||||||    
32221521 caaattttgaaccaaatacattaacttttgttgactaatttt 32221562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 40955837 - 40955796
Alignment:
494 caaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    |||||||||||||||||||| |||||||| |||| |||||||    
40955837 caaattttgaactaaatacaataatttttattgatcaatttt 40955796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 535
Target Start/End: Original strand, 26914501 - 26914541
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    ||||||||||| | ||||||||||||||||||| |||||||    
26914501 aaattttgaaccacatacattaatttttgttgatcaatttt 26914541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 535
Target Start/End: Complemental strand, 40905860 - 40905820
Alignment:
495 aaattttgaactaaatacattaatttttgttgaccaatttt 535  Q
    ||||||||||| ||||| ||||| |||||||||||||||||    
40905860 aaattttgaaccaaataaattaacttttgttgaccaatttt 40905820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 554
Target Start/End: Original strand, 46829106 - 46829154
Alignment:
507 aaatacattaatttttgttgaccaa-ttttacttatattttgggacgaa 554  Q
    ||||||||||| ||||||||||||| |||| |||||||||| |||||||    
46829106 aaatacattaacttttgttgaccaatttttgcttatattttaggacgaa 46829154  T

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