View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11170_low_5 (Length: 531)
Name: NF11170_low_5
Description: NF11170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11170_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 40754346 - 40753834
Alignment:
| Q |
1 |
aagtcggggaagttggggtgctagtggaggagggtgtggattggaggttcacatggagaagaaatttgtttgtatgggaagaggaattgttacttagtct |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40754346 |
aagtgggggaagttggggtgctagtggaggagggagtggattggaggttcatatggagaagaaatttgtttgtaggggaagaggaattgttacttagtct |
40754247 |
T |
|
| Q |
101 |
taaggaggatttggaggagatgaggtggtctcaagagattgatgtgtggagatggaagttagaagaaagtggagttttttcggtgaagtcggcgtacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40754246 |
taaggaggatttggaggagatgaggtggtctcaagagattgatgtgtggagatggaagttagaagaaagtggagttttttcggtgaagtcggcgtacatg |
40754147 |
T |
|
| Q |
201 |
aggttggaggaatcggtgttgagggaggatttgtgggatgaagaggaaaagagagtttttgaagacatgtggaagagctccgcaccatctaaagtggtgg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40754146 |
aggttggaggaatcggtgttgagggaggatttgtgggatgaagaggaaaagggagtttttgaagacatgtggaagagccccgcaccatctaaagtggtgg |
40754047 |
T |
|
| Q |
301 |
cgtttgtttggaaggcactccgtaaccggatagctgcaaaagataaccttgtgttaaggaacgttcttccaccggatgcttccattttgtgtgttttgtg |
400 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40754046 |
cgtttgcttggaaggcactccgtaaccggatagctacaaaagataaccttgtgttaaggaacgttcttccaccggaggcttccattttgtgtgttttgtg |
40753947 |
T |
|
| Q |
401 |
caatagggatgaggaatcctcgagtcatcnnnnnnnacattgtgaagtggtgaggtcggtttggttgagattgatggggtggatgaattgctcttttata |
500 |
Q |
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| T |
40753946 |
caatagggatgaggaatcctcaagtcatctttttttacattgtgaagtggtgaggtcggtttggttgagattgatggggtggatgaattgctcttttata |
40753847 |
T |
|
| Q |
501 |
attcccccgaatt |
513 |
Q |
| |
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||||||||||||| |
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| T |
40753846 |
attcccccgaatt |
40753834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 501
Target Start/End: Original strand, 13853788 - 13854283
Alignment:
| Q |
6 |
ggggaagttggggtgctagtggaggagggtgtggattggaggttcacatggagaagaaatttgtttgtatgggaagaggaattgttacttagtcttaagg |
105 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||| ||||||||||| | |
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| T |
13853788 |
ggggaagttggggtgcgagtggaggagggagtggattggaggttcatatggagaaggaatttgtttgtgtgggaagacgaattgttgcttagtcttaatg |
13853887 |
T |
|
| Q |
106 |
aggatttggaggagatgaggtggtctcaagagattgatgtgtggagatggaagttagaagaaagtggagttttttcggtgaagtcggcgtacatgaggtt |
205 |
Q |
| |
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|||||||||| ||| |||||||| |||||||| ||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||||| | |||||| |
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| T |
13853888 |
aggatttggaagagttgaggtggactcaagagcttgatgtgtggtggtggaagttggaagatagtggagttttttcggtgaagtcggcgtataagaggtt |
13853987 |
T |
|
| Q |
206 |
ggaggaatcggtgttgagggaggatttgtgggatgaagaggaaaagagagtttttgaagacatgtggaagagctccgcaccatctaaagtggtggcgttt |
305 |
Q |
| |
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|||||| ||| | ||||||||| ||||| ||||||||||||| |||| |||||||| |||||||||||| ||| || || ||||||||||||||| |
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| T |
13853988 |
ggaggaggtggtttcaagggaggatgggtggggtgaagaggaaaagggagtgtttgaagatatgtggaagagccccgtgccgtcaaaagtggtggcgttt |
13854087 |
T |
|
| Q |
306 |
gtttggaaggcactccgtaaccggatagctgcaaaagataaccttgtgttaaggaacgttcttccaccggatgcttccattttgtgtgttttgtgcaata |
405 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||| ||| | ||||| ||| |||||||||| || || | ||||||||| ||||| |||| |
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| T |
13854088 |
acttggaaggcacttcgtaaccggatagcaacaaaagataacctcgtgattaggaatgttattccaccggaggcctcaaatttgtgtgtcttgtgtaata |
13854187 |
T |
|
| Q |
406 |
gggatgaggaatcctcgagtcatcnnnnnnnacattgtgaagtggtgaggtcggtttggttgagattgatggggtggatgaattgctcttttataa |
501 |
Q |
| |
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||||||| ||||| || |||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| || ||||||| |
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| T |
13854188 |
gggatgaagaatcaacgtgtcacctatttctacattgtgaggtggtgaggtcggtttggttgagattgatggtgtggatgaattgttcctttataa |
13854283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 8504854 - 8504763
Alignment:
| Q |
215 |
ggtgttgagggaggatttgtgggatgaagaggaaaagagagtttttgaagacatgtggaagagctccgcaccatctaaagtggtggcgtttg |
306 |
Q |
| |
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||||||||| || ||| | |||||||||| || |||| || |||||| |||||||||||||||| ||||| || |||||||| ||||||| |
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| T |
8504854 |
ggtgttgagcgaagatgtttgggatgaaggtgagaagatggtgtttgaaaacatgtggaagagctcggcaccgtccaaagtggttgcgtttg |
8504763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 19471613 - 19471721
Alignment:
| Q |
141 |
gatgtgtggagatggaagttagaagaaagtggagttttttcggtgaagtcggcgtacatgaggttggaggaatcggtgttgagggaggatttgtgggatg |
240 |
Q |
| |
|
|||| |||||||||||| |||||||| | ||| |||| |||||||||||||| || ||| |||||||| | |||||||| ||| ||||||||||||| |
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| T |
19471613 |
gatgagtggagatggaaattagaagataatggttttttctcggtgaagtcggcatatttgaagttggagggagtggtgttgaaggaagatttgtgggatg |
19471712 |
T |
|
| Q |
241 |
aagaggaaa |
249 |
Q |
| |
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||||||||| |
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| T |
19471713 |
aagaggaaa |
19471721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 46641645 - 46641722
Alignment:
| Q |
294 |
gtggtggcgtttgtttggaaggcactccgtaaccggatagctgcaaaagataaccttgtgttaaggaacgttcttcca |
371 |
Q |
| |
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||||||||||||| |||||||||||| | ||| |||||||| ||||| ||||||||||||||||||| || |||||| |
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| T |
46641645 |
gtggtggcgtttgcttggaaggcacttcttaatcggatagcaacaaaatataaccttgtgttaaggaatgtccttcca |
46641722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 33291268 - 33291113
Alignment:
| Q |
54 |
tggagaagaaatttgtttgtatgggaagaggaattgttacttagtcttaaggaggatttggaggagatgaggtggtctcaagagattgatgtgtggagat |
153 |
Q |
| |
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||||||||| | || |||| |||||| ||||| || || ||||||||||||||||| || || | |||| ||||||||||||| |||| |||||||| |
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| T |
33291268 |
tggagaagacaattatttgcatgggaggaggagttattccttagtcttaaggaggacttagaaggtatgatatggtctcaagagaaggatgagtggagat |
33291169 |
T |
|
| Q |
154 |
ggaagttagaagaaagtggagttttttcggtgaagtcggcgtacatgaggttggag |
209 |
Q |
| |
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|||| ||||| || |||| ||| ||||||||||||| |||| || ||||||| |
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| T |
33291168 |
ggaatttagacgattcaggagcctttacggtgaagtcggcctacacgaagttggag |
33291113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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