View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11170_low_6 (Length: 498)
Name: NF11170_low_6
Description: NF11170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11170_low_6 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 45283028 - 45282531
Alignment:
| Q |
1 |
ttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaattt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
45283028 |
ttcttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattatgcctaatgctgttgttgccaaggatggtagcggccaattt |
45282929 |
T |
|
| Q |
101 |
aaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45282928 |
aaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcc |
45282829 |
T |
|
| Q |
201 |
ccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaagaccatgcaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282828 |
ccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcactggtagaaagagctttgctgctggtgtcaagaccatgcaaac |
45282729 |
T |
|
| Q |
301 |
cgccaccttcggtacgtaattcaattatcatcgatcaaaacttttttattttatttaattaattatgtacttatgaatgaagaaagagtatatgagaaaa |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
45282728 |
cgccaccttcggtacttaattcaattatcatcgatcaaaacttttttattttatttaattaattatttacttatgaatgaagaaagagtatatgagaaaa |
45282629 |
T |
|
| Q |
401 |
agtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagatatagatacacatataacattgacatatatagccaatgtgat |
498 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282628 |
agtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagatatagatacacatataacattgacatatatagccaatgtgat |
45282531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 3 - 498
Target Start/End: Complemental strand, 45274785 - 45274288
Alignment:
| Q |
3 |
cttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaatttaa |
102 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
45274785 |
cttctgatcgcaagcttttggctaaaatgcaacgaaaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaatttaa |
45274686 |
T |
|
| Q |
103 |
aaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcccc |
202 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||| |
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|
| T |
45274685 |
aaccatccaggctgctcttgcctcttatcctaagggaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaatacatcactgtaccc |
45274586 |
T |
|
| Q |
203 |
aaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaagaccatgcaaaccg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| |
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|
| T |
45274585 |
aaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagaactttgctgccggtaccaagaccatgcaaaccg |
45274486 |
T |
|
| Q |
303 |
ccaccttcggtacgtaattcaattatcatcgatcaaaac-ttttttattttatttaattaattatgta-cttatgaatgaagaaagagtatatgagaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| | ||||||||||||||| ||||||| | || ||||||| |||||||||||||||| |||||| |
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|
| T |
45274485 |
ccaccttcggtacgtaattcaattattatctatcaaagctttttttattttatttgattaattgtataccttatgattgaagaaagagtatataagaaaa |
45274386 |
T |
|
| Q |
401 |
agtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagatatagatacacatataacattgacatatatagccaatgtgat |
498 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||| | | ||| |||||||||||||||||||||||||| |||||| |
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|
| T |
45274385 |
agtagcatcactctcaaaatttatttttgaagaaaacataactcgcattgaaaagagaaatatatacatataacattgacatatatagccagtgtgat |
45274288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 45271254 - 45270796
Alignment:
| Q |
1 |
ttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
45271254 |
ttcttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaattt |
45271155 |
T |
|
| Q |
101 |
aaaaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271154 |
aaaaccatccaggctgctcttgcctcttaccctaagggaaacaaagacagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcc |
45271055 |
T |
|
| Q |
201 |
ccaaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaagaccatgcaaac |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | || ||| ||| || | | || |
|
|
| T |
45271054 |
ccaaggaggctgttaacattcttatgtatggtgatggccctgcaaagaccattgtcactggtagaaagaaccaaatggccggtaccaacacacagaacac |
45270955 |
T |
|
| Q |
301 |
cgccaccttcggtacgtaattcaattatcatcgatcaaaacttttttattttatttaattaattatgta-cttatgaatgaagaaagagtatatgagaaa |
399 |
Q |
| |
|
|||||||| |||||||||||| |||| |||||||||| | ||||||||||||||||||||| |||| |||||||||||||| |||||| ||| |||| |
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|
| T |
45270954 |
tgccaccttttgtacgtaattcagttat-atcgatcaaagc--ttttattttatttaattaattgtgtaccttatgaatgaagagagagtagatgtgaaa |
45270858 |
T |
|
| Q |
400 |
aagtggcatcactctcaaaattcatttttgaagaaaaca-taactaacattgaaaagatata |
460 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
45270857 |
tagtagcatcactctcaaaattcatttttgaaaaaaacattaactcacattgaaaagatata |
45270796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 3 - 457
Target Start/End: Complemental strand, 45294414 - 45293957
Alignment:
| Q |
3 |
cttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaatttaa |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||| || |||| |||||||||| |||| || || |||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
45294414 |
cttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaa |
45294315 |
T |
|
| Q |
103 |
aaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcccc |
202 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||| |||||||||||| | ||| |
|
|
| T |
45294314 |
aaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattccc |
45294215 |
T |
|
| Q |
203 |
aaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaagaccatgcaaaccg |
302 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||| | || ||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
45294214 |
aaagacgctgttaacattcttatgtatggtgatggccccggaaagaccattgttaccggaagaaagaacggtgctgctggtgtcaagaccatgcaaaccg |
45294115 |
T |
|
| Q |
303 |
ccaccttcggtacgtaattcaattatcatcgatcaaaacttttttattttatttaattaattatgta-cttatgaatgaagaaagagta--tatgagaaa |
399 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
45294114 |
ccaccttcggtaagtaattcaattatcatcgatcacaacttttttattttatttaataaattgtgtaccttatgaatgaagaaagggtaatgatgagaaa |
45294015 |
T |
|
| Q |
400 |
aagtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagat |
457 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45294014 |
tagtaacatcactctcaaaattcatttttgaagaaaacataactcacattgaaaagat |
45293957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 3 - 457
Target Start/End: Complemental strand, 45303374 - 45302917
Alignment:
| Q |
3 |
cttctggtcgcaagcttttggctaaaatgcaacgaaaaggatggagagaaaatattaggcctaatgttgttgttgccaaggatggtagcggccaatttaa |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||| || |||| |||||||||| |||| || || |||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
45303374 |
cttctgatcgcaagcttttggctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaa |
45303275 |
T |
|
| Q |
103 |
aaccatccaggctgctcttgcctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtcccc |
202 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||| |||||||||||| | ||| |
|
|
| T |
45303274 |
aaccatccaggctgctattgccgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattccc |
45303175 |
T |
|
| Q |
203 |
aaggatgctgttaacattcttatgtatggtgatggccctgcaaggaccattgtcaccggtagaaagagctttgctgctggtgtcaagaccatgcaaaccg |
302 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||| | || ||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
45303174 |
aaagacgctgttaacattcttatgtatggtgatggccccggaaagaccattgttaccggaagaaagaacggtgctgctggtgtcaagaccatgcaaaccg |
45303075 |
T |
|
| Q |
303 |
ccaccttcggtacgtaattcaattatcatcgatcaaaacttttttattttatttaattaattatgta-cttatgaatgaagaaagagta--tatgagaaa |
399 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
45303074 |
ccaccttcggtaagtaattcaattatcatcgatcacaacttttttattttatttaataaattgtgtaccttatgaatgaagaaagggtaatgatgagaaa |
45302975 |
T |
|
| Q |
400 |
aagtggcatcactctcaaaattcatttttgaagaaaacataactaacattgaaaagat |
457 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45302974 |
tagtaacatcactctcaaaattcatttttgaagaaaacataactcacattgaaaagat |
45302917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 38588302 - 38588231
Alignment:
| Q |
124 |
ctcttaccctaagggaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcac |
195 |
Q |
| |
|
|||||| ||||||||| |||||||||||| ||||||| || ||||| || ||||||||||| |||||||| |
|
|
| T |
38588302 |
ctcttatcctaagggattcaaaggcagatacattatctatgtcaaggctggggtctatgacgagtacatcac |
38588231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 38583289 - 38583244
Alignment:
| Q |
144 |
aaggcagatatgttatctacgttaaggccggtgtctatgacgaata |
189 |
Q |
| |
|
|||| |||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
38583289 |
aaggtagatatgtcatctacgtcaaggctggtgtctatgacgaata |
38583244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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