View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11170_low_7 (Length: 457)
Name: NF11170_low_7
Description: NF11170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11170_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 202 - 432
Target Start/End: Complemental strand, 56019813 - 56019582
Alignment:
| Q |
202 |
ttgtagtgtttggttttcacaatattgattttgcaaacactgaggctggaggtgctttggttttacaatagataaatggtgttgtaattatttggcttgc |
301 |
Q |
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| T |
56019813 |
ttgtagtgtttggttttcacaatattgattttgcaaacactgaggttggaggtgctttgattttacaatagataaatggtgttgtaattatttggcttgc |
56019714 |
T |
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| Q |
302 |
aattgccttggtaattaactgaactgccaaaggaaatttcaagttttatca-ttgattggtgagaatagagaaataaattgttgatttgttcaaggctat |
400 |
Q |
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| T |
56019713 |
aattgccttggtaattaactgatctgccaaaggaaatttcaagttttatcatttgattggtgagaatagagaaataaattgttgatttgttcaaggctat |
56019614 |
T |
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| Q |
401 |
tagtagcaaagtttgctttggttgttgtaata |
432 |
Q |
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| T |
56019613 |
tagtagcaaagtttgctttggttgttgtaata |
56019582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 56020076 - 56019886
Alignment:
| Q |
14 |
agagaacgtccaaccattggtgaaattgttgatgcactaaaatacttatcttccaagagtacctctaaagtctataaacatggggtgcgtagctaaccgt |
113 |
Q |
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| T |
56020076 |
agagaacgtccaaccattggtgaaattgttgatgcactaaaatacttatcttccaagagtacctctaaagtctataaacatgggttgcgcagctaaccgt |
56019977 |
T |
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| Q |
114 |
tgcaaccacatttcaaaccagacagaagttaatttacataggtataagattctaggttgtttttcatttatgttcatgctttagatttttg |
204 |
Q |
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| T |
56019976 |
tgcaaccacatttcaaaccagacagaagttaatatacttaggtataagattctaggttgtttttcatttatgttcatgctttagatttttg |
56019886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 6155705 - 6155619
Alignment:
| Q |
114 |
tgcaaccacatttcaaaccagacagaagttaatttacataggtataagattctaggttgtttttcatttatgttcatgctttagatt |
200 |
Q |
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||||||||||||||||| ||||| | |||| || |||||| || ||||||||||||||||||||||||||| |||| ||| |||| |
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| T |
6155705 |
tgcaaccacatttcaaattagacatagattaaatttcataggcattagattctaggttgtttttcatttatgtccatgattttgatt |
6155619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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