View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_high_1 (Length: 681)
Name: NF11171A_high_1
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 593; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 7 - 668
Target Start/End: Complemental strand, 4585099 - 4584435
Alignment:
| Q |
7 |
agatttggcatagattttcatagagttgttt-agttatgcaatcttttcattgtattt-atactattttcagtattagggat-atcaagctttcagattt |
103 |
Q |
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| T |
4585099 |
agatttggcataaattttcatagagttgttttagttatgcaatcttttcattgtattttataccgttttcagtattagggattatcaagctttcagattt |
4585000 |
T |
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| Q |
104 |
tcattttagttccatttttagtggtatcatgcttttaatttactgacgcggttacattgccaacctttatattacggcaaactgtggatgatacagtcaa |
203 |
Q |
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| T |
4584999 |
tcattttagttccatttttactggtatcatgcttttaatttactgacgcggttacattgccaacctttatattacggcaaactgtggacgatacagtcaa |
4584900 |
T |
|
| Q |
204 |
gataactgctgcaatgacgttgcaaagatctcaaaatatgttatactacgtctgcattatggctgcggactgtgatttaaaatcataaatggtatatagc |
303 |
Q |
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| T |
4584899 |
gataactgctgcaatgacgttgcaaagatctcaaaatatgttatactacgtctgcattatggctgcggactgtgatttaaaatcataagtggtatatagc |
4584800 |
T |
|
| Q |
304 |
tactttaattggaactagtttaatacgaaaacgcatcaacttcgtctgctacatctgtacattatggaatactaatattatcaatccagattgaatgcag |
403 |
Q |
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| T |
4584799 |
tactttaatcggaactagtttaatacgaaaacgcatcaacttcgtctgctacatctgtgcattatggaatactaatattatcaatccagattgaatgcag |
4584700 |
T |
|
| Q |
404 |
tcactaagattgaatccagattgctaacattatggaatgttagatgaaatacggacagtttgtgttttgaattttgaaatcggatttacataaaacttaa |
503 |
Q |
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| T |
4584699 |
tcactaagattgaatccagattgctgacattatggaatgttagatgaaatacggacagtttgtgttttgaattttgaaatcggatttacataaaacttaa |
4584600 |
T |
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| Q |
504 |
aattataaccatctgatcttcatatatggccgagattacaacagtaggaaatgctgactgcaaatcatgacagggtaaaacatttgtctagattaatctc |
603 |
Q |
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| T |
4584599 |
aattataaccatccgatcttcatatatggccgagattacaacagtaggaaatgctgactgcaaatcatgacagggtaaaatatttgtctagattaatctc |
4584500 |
T |
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| Q |
604 |
attctacatattctttgacaggatttgtcacattgtactaaaacagctttcaaaactcttgagaa |
668 |
Q |
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| T |
4584499 |
attctacatattctttgacaggatttgtcacattgtactgaaacagctttcaaaactcttgagaa |
4584435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 578 - 668
Target Start/End: Complemental strand, 4592269 - 4592179
Alignment:
| Q |
578 |
gtaaaacatttgtctagattaatctcattctacatattctttgacaggatttgtcacattgtactaaaacagctttcaaaactcttgagaa |
668 |
Q |
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| T |
4592269 |
gtaaaacattggtctagattaatctcattctacatattctttgacaggatatgtctcattgtactgaaacagctttcaaaactcttgagaa |
4592179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 583 - 668
Target Start/End: Complemental strand, 4573293 - 4573208
Alignment:
| Q |
583 |
acatttgtctagattaatctcattctacatattctttgacaggatttgtcacattgtactaaaacagctttcaaaactcttgagaa |
668 |
Q |
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| T |
4573293 |
acattggtctagattaatctcatcctacatattctttgacaggatatatcacattgtactgaaacagctttccaaactgttgagaa |
4573208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 316 - 406
Target Start/End: Complemental strand, 4592571 - 4592482
Alignment:
| Q |
316 |
aactagtttaatacgaaaacgcatcaacttcgtctgctacatctgtacattatggaatactaatattatcaatccagattgaatgcagtca |
406 |
Q |
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| T |
4592571 |
aactagtttaatataaaaacacatcaacttggtctgctacatctgtacattatggaatact-atactatcgatccagattgactgcagtca |
4592482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 599 - 663
Target Start/End: Complemental strand, 4600682 - 4600618
Alignment:
| Q |
599 |
atctcattctacatattctttgacaggatttgtcacattgtactaaaacagctttcaaaactctt |
663 |
Q |
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| T |
4600682 |
atctcattctacatattctttgacagaacctgtcacattgtactgaaacaactttcaaaactctt |
4600618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 527 - 578
Target Start/End: Complemental strand, 4592380 - 4592329
Alignment:
| Q |
527 |
atatggccgagattacaacagtaggaaatgctgactgcaaatcatgacaggg |
578 |
Q |
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| T |
4592380 |
atatggccgagactaccacagtaggaaatgctgacagcaaatcatgacaggg |
4592329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 491
Target Start/End: Complemental strand, 4592467 - 4592410
Alignment:
| Q |
434 |
tatggaatgttagatgaaatacggacagtttgtgttttgaattttgaaatcggattta |
491 |
Q |
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| T |
4592467 |
tatggattgttagaggaagtacgaacggtttgtgttttaaattttgaaatctgattta |
4592410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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