View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_high_10 (Length: 460)
Name: NF11171A_high_10
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_high_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 111 - 460
Target Start/End: Original strand, 3589726 - 3590074
Alignment:
| Q |
111 |
aattgaatatatgaattttcacaaaaatttctatttaaggtccttaaaagtattcttgagatgctcattagcatttctcatttttacaatatatttaatt |
210 |
Q |
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| T |
3589726 |
aattgaatatatgaattttcaccaaaatttctatttaaggtccttaaaagtattcttaagatgctcattagcatttctcatttttacaatatatttaatt |
3589825 |
T |
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| Q |
211 |
aatgttatacaactcaataacattttattggatatatatgttcaacacaaatgaatttgttttttaagaacacaaatgaatgttggatattaagtgtata |
310 |
Q |
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| T |
3589826 |
aatgttatacaactcaataacattttattggatatatatattcaacacaaatgaattt-ttttttaggaacacaaatgaatgttggatattaagtgtata |
3589924 |
T |
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| Q |
311 |
cttttctactagtttttacataaatataaaattcgatatattattgatgtgtgtcaagatcaagattcaaacaatcttattataagatattactttatta |
410 |
Q |
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| T |
3589925 |
cttttctactagtttttacataaatataaaattcgatatattattgatgtgtgtcaagatcaagattcaaacaatcttattataagatattactttatta |
3590024 |
T |
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| Q |
411 |
ttaatttctttatttgaggtgaataagggttgataagaattactagtttt |
460 |
Q |
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| T |
3590025 |
ttaatttctttatttgaggtgaataagggttgataagaattactagtttt |
3590074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 3589609 - 3589682
Alignment:
| Q |
7 |
acacatgatttatgtcctcttgaccnnnnnnntatattatacagatgattttagatttaatttttacgagcctct |
81 |
Q |
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| T |
3589609 |
acacatgatttatgtcctcttgaccaaaaaaaaa-attatacagatgattttagatttaatttttacgagcctct |
3589682 |
T |
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