View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_high_11 (Length: 451)
Name: NF11171A_high_11
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 4 - 429
Target Start/End: Original strand, 32707001 - 32707425
Alignment:
| Q |
4 |
gactgagaagaatgatccaactaattttattttatgtattatgatgatgatcaaatggtaaaaattataacaagtagttgctcaaatggtttaatgaact |
103 |
Q |
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| T |
32707001 |
gactgaaaaaaatgatccaactaattttattttatgtattatgatgatgatcaaatggtaaaaattataacaagtagttgctcaagtggtttaatgaact |
32707100 |
T |
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| Q |
104 |
ccaccaaatgacgaattgtttagaagaacctaaatcgatttctggatggaacaatcatcggtcagactttacttacatgataagtattctatattctctg |
203 |
Q |
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| T |
32707101 |
ccaccaaatgacgaattgtttagaagaacctaaatcgatttctggatggaacaatcatcggtcagactttacttacatgataagtattctatattctctg |
32707200 |
T |
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| Q |
204 |
agaattagtccaactgttataagttgtgggaatatctttatgtctattcaagaattttaaaaaagagtgacgagcctacatggaataaatttggctattt |
303 |
Q |
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| T |
32707201 |
agaattagtccaactgttataagttgtgggaatatatttatgtctattcaagaatttttaaaaagagtgacgagactacatggaataaatttggctattt |
32707300 |
T |
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| Q |
304 |
gcatacatgtaattttcattctttgttgattgatatttcatcattaaggtttagttaagattgtgagagccatcatctagttaaccaaaggaatgctaca |
403 |
Q |
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| T |
32707301 |
gcacacaagtaattttcattctttgttgattgatatttcatcattaagg-ttagctaagattgtgagagccatcatctagttaaccaaaggaatgctaca |
32707399 |
T |
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| Q |
404 |
tttgcatgaatgaactgtcatggcag |
429 |
Q |
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| T |
32707400 |
tttgcatgaatgaactgtcatggcag |
32707425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 34403705 - 34403749
Alignment:
| Q |
94 |
ttaatgaactccaccaaatgacgaattgtttagaagaacctaaat |
138 |
Q |
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| T |
34403705 |
ttaatgagctccaccaaaggacgaattgtttagaagaacttaaat |
34403749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 28094157 - 28094221
Alignment:
| Q |
94 |
ttaatgaactccaccaaatgacgaattgtttagaagaacctaaatcgatttctggatggaacaat |
158 |
Q |
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| T |
28094157 |
ttaatgagctccaccaaatgacgaattgtgtaggagaacctagttcaattcttggatggaacaat |
28094221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 28595835 - 28595875
Alignment:
| Q |
94 |
ttaatgaactccaccaaatgacgaattgtttagaagaacct |
134 |
Q |
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| T |
28595835 |
ttaatgagctccaccaaatgacgatttgttcagaagaacct |
28595875 |
T |
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