View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_high_21 (Length: 391)
Name: NF11171A_high_21
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 368
Target Start/End: Complemental strand, 23609212 - 23608854
Alignment:
| Q |
10 |
atgtttataacatcataagattgattctccctctcacgcaaaccatcttctcaacacatcttaaccaatctcttcgtccataaaacacaatcaccaccct |
109 |
Q |
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| T |
23609212 |
atgtttataacatcataagattgattctccctctcacgcaaaccatcttctcaacacatctcaaccaatctcttcgtccataaaacacaatcaccaccct |
23609113 |
T |
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| Q |
110 |
atgattataaatagattcaaatcacatcaaccctttggaattgcaaacataccgagctcatcaaaatcgnnnnnnncatccttgattgattctctctcta |
209 |
Q |
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| T |
23609112 |
atgattattaatagattcaaatcacatcaaccctttggaattgtaaacataccgagctcatcaaaatcgtttttttcatccttgattgattctctctcta |
23609013 |
T |
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| Q |
210 |
tagagaaaaagggtgtatgtgtagaaaagaggtgtgtagcaatcttttttaatctcaagcatatccaactggtgatgaatgatgattatgattacttgtt |
309 |
Q |
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| T |
23609012 |
tagagaaaaagggtgtgtgtgtagaaaagaggtgtgtagcaatcttttttaatctcaagcatatccaactgatgatgaatgatgattatgattacttgtt |
23608913 |
T |
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| Q |
310 |
taaggttgtattgattggtgactttggtgttggaaaatctaaccttttgttgagattca |
368 |
Q |
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| T |
23608912 |
taaggttgtattgattggtgactttggtgttggaaaatctaaccttttgttgagattca |
23608854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 13393363 - 13393311
Alignment:
| Q |
306 |
tgtttaaggttgtattgattggtgactttggtgttggaaaatctaaccttttg |
358 |
Q |
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| T |
13393363 |
tgttcaaggttgttatgattggtgactctggtgttggaaaatctcagcttttg |
13393311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 368
Target Start/End: Complemental strand, 4375121 - 4375041
Alignment:
| Q |
288 |
atgatgattatgattacttgtttaaggttgtattgattggtgactttggtgttggaaaatctaaccttttgttgagattca |
368 |
Q |
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| T |
4375121 |
atgatgattatgattatctgtttaaggttgtgttgattggtgattctggtgttggaaaatccaaccttttgtcgagattca |
4375041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 4375267 - 4375155
Alignment:
| Q |
111 |
tgattataaatagattcaaatcacatcaaccctttggaattgcaaacataccgagctcatcaaaatc-gnnnnnnncatccttgattgattctctctcta |
209 |
Q |
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||||||| |||| |||||||||||| |||||||| |||| |||||||||| | |||||||||||| ||||| ||||||||||||||||| |
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| T |
4375267 |
tgattattaatacattcaaatcacagaaacccttttgaatctcaaacatacccaactcatcaaaatcattttttttcatccctgattgattctctctctg |
4375168 |
T |
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| Q |
210 |
tagagaaaaaggg |
222 |
Q |
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| T |
4375167 |
tagagaaaaaggg |
4375155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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