View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_high_23 (Length: 368)

Name: NF11171A_high_23
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_high_23
NF11171A_high_23
[»] chr8 (3 HSPs)
chr8 (156-233)||(16686336-16686413)
chr8 (156-222)||(20863923-20863989)
chr8 (170-229)||(1674226-1674285)
[»] chr6 (26 HSPs)
chr6 (156-233)||(4557111-4557188)
chr6 (156-233)||(4570958-4571035)
chr6 (156-229)||(4606964-4607037)
chr6 (162-233)||(4585628-4585699)
chr6 (159-233)||(4560495-4560569)
chr6 (170-233)||(4480693-4480756)
chr6 (167-231)||(4563708-4563772)
chr6 (173-230)||(3171744-3171801)
chr6 (170-233)||(4492955-4493018)
chr6 (170-233)||(4505857-4505920)
chr6 (167-233)||(4574305-4574371)
chr6 (156-233)||(4579418-4579495)
chr6 (176-230)||(4504469-4504523)
chr6 (165-226)||(4598166-4598227)
chr6 (173-233)||(4267235-4267295)
chr6 (173-229)||(4299813-4299869)
chr6 (174-233)||(4392095-4392154)
chr6 (170-229)||(4516321-4516380)
chr6 (166-233)||(4592227-4592294)
chr6 (170-229)||(4601789-4601848)
chr6 (170-229)||(4617022-4617081)
chr6 (170-221)||(4515202-4515253)
chr6 (173-232)||(4622145-4622204)
chr6 (176-229)||(4490428-4490481)
chr6 (165-226)||(4613794-4613855)
chr6 (193-233)||(4568076-4568116)
[»] chr5 (2 HSPs)
chr5 (170-229)||(28000172-28000231)
chr5 (173-231)||(24103002-24103060)
[»] scaffold0477 (1 HSPs)
scaffold0477 (173-231)||(4757-4815)
[»] chr7 (1 HSPs)
chr7 (176-229)||(3086426-3086479)
[»] scaffold0288 (1 HSPs)
scaffold0288 (173-229)||(3792-3848)
[»] chr3 (1 HSPs)
chr3 (170-229)||(1281114-1281173)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 16686413 - 16686336
Alignment:
Q  156 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16686413 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 16686336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 20863989 - 20863923
Alignment:
Q  156 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaac 222  Q
    |||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||    
T  20863989 gtcacttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaac 20863923  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 1674226 - 1674285
Alignment:
Q  170 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 229  Q
    ||||||||||||||| || ||| |||||||||| ||||||||||||||||||||||||||    
T  1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacc 1674285  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 4557111 - 4557188
Alignment:
Q  156 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  4557111 gtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggt 4557188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 4570958 - 4571035
Alignment:
Q  156 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4570958 gtcacttaggtgtgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggt 4571035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 4607037 - 4606964
Alignment:
Q  156 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 229  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  4607037 gtcacttaggtttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacc 4606964  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 4585628 - 4585699
Alignment:
Q  162 taggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||    
T  4585628 taggtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggt 4585699  T

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Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 4560495 - 4560569
Alignment:
Q  159 acttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    ||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  4560495 acttatgtttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggt 4560569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 4480693 - 4480756
Alignment:
Q  170 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggt 4480756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 4563708 - 4563772
Alignment:
Q  167 ttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccag 231  Q
    ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||    
T  4563708 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccag 4563772  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 3171744 - 3171801
Alignment:
Q  173 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacca 230  Q
    |||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  3171744 ttgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccacca 3171801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 4492955 - 4493018
Alignment:
Q  170 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    ||||||||||||||| || ||| | |||||||| ||||||||||||||||||||||||||||||    
T  4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggt 4493018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 4505857 - 4505920
Alignment:
Q  170 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    ||||||||||||||| |||||| |||| ||||| |||||||||||| |||||||||||||||||    
T  4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggt 4505920  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 4574305 - 4574371
Alignment:
Q  167 ttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    |||||||||||||||||| |||||| |||||||||| ||||||||  ||||||||||||| ||||||    
T  4574305 ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggt 4574371  T

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Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 4579418 - 4579495
Alignment:
Q  156 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    |||||||| ||| |||||||||| || || |||||| |||||||||| |||||||||||||||||||| || ||||||    
T  4579418 gtcacttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggt 4579495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 4504523 - 4504469
Alignment:
Q  176 tttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacca 230  Q
    ||||||||| || ||| |||||||||| |||||||||||||||||||||||||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccacca 4504469  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 4598166 - 4598227
Alignment:
Q  165 gtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaacc 226  Q
    |||||||| |||||||| || |||||| |||||||||| || ||||||||||||||||||||    
T  4598166 gtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacc 4598227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 4267295 - 4267235
Alignment:
Q  173 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    |||||||||||  |||||| |||| ||||| |||||||||||||||||| |||||||||||    
T  4267295 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggt 4267235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 4299869 - 4299813
Alignment:
Q  173 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 229  Q
    ||||||||||| ||||||| |||| ||||| |||||||||||||| |||||||||||    
T  4299869 ttgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacc 4299813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 4392154 - 4392095
Alignment:
Q  174 tgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    ||||||||||| |||||| |||||| ||| |||||||||||| ||||| |||||||||||    
T  4392154 tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggt 4392095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 4516321 - 4516380
Alignment:
Q  170 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 229  Q
    ||||||||| ||||  |||||| |||||||||||||||||||||  ||||||||||||||    
T  4516321 attttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacc 4516380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 4592227 - 4592294
Alignment:
Q  166 tttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    ||||||||| ||||||||| |||||| | |||| ||| ||||||||||| ||||||||||| ||||||    
T  4592227 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggt 4592294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 4601789 - 4601848
Alignment:
Q  170 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 229  Q
    ||||||||||||||| |||||| |||| ||||| |||| |||| ||||||||||||||||    
T  4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacc 4601848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 4617022 - 4617081
Alignment:
Q  170 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 229  Q
    ||||||||||||||| || ||| |||| ||||| | ||||||||||||||||||||||||    
T  4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacc 4617081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 4515253 - 4515202
Alignment:
Q  170 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaa 221  Q
    ||||||||||||||| |||||| | |||||||| |||||||||| |||||||    
T  4515253 attttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaa 4515202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 4622145 - 4622204
Alignment:
Q  173 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccagg 232  Q
    |||||||||||  |||||| |||| ||||| ||||||||  |||||||||||||||||||    
T  4622145 ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagg 4622204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 4490481 - 4490428
Alignment:
Q  176 tttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 229  Q
    ||||||||  || ||| |||||||||| ||||||||||||||||||| ||||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccacc 4490428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 4613855 - 4613794
Alignment:
Q  165 gtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaacc 226  Q
    |||||||||||||| ||||  |||||  | |||||||| ||||||||||| |||||||||||    
T  4613855 gtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacc 4613794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 4568076 - 4568116
Alignment:
Q  193 taatcactttttccaagttcatgtatgaacaaccaccaggt 233  Q
    |||||||||| |||||||||||||||||| || ||||||||    
T  4568076 taatcactttgtccaagttcatgtatgaagaatcaccaggt 4568116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 28000231 - 28000172
Alignment:
Q  170 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 229  Q
    ||||||||||| ||| || ||| |||||||||| ||||||||||||||||||||||||||    
T  28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacc 28000172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 24103002 - 24103060
Alignment:
Q  173 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccag 231  Q
    |||||||||||  |||||| |||| ||||| |||||||||||||||||| |||||||||    
T  24103002 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccag 24103060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 4815 - 4757
Alignment:
Q  173 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccag 231  Q
    |||||||||||  |||||| |||||||||| |||||||||||||||||||| |||||||    
T  4815 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccag 4757  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 3086426 - 3086479
Alignment:
Q  176 tttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 229  Q
    ||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccacc 3086479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 3848 - 3792
Alignment:
Q  173 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 229  Q
    ||||||||||||||||||| |||| ||||| |||| |||||||||||||| ||||||    
T  3848 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacc 3792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 1281114 - 1281173
Alignment:
Q  170 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 229  Q
    ||||||||||||||| |  ||| |||||||||| || |||||||||||||||||||||||    
T  1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacc 1281173  T

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