View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_high_33 (Length: 278)
Name: NF11171A_high_33
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 268
Target Start/End: Complemental strand, 19506194 - 19505929
Alignment:
| Q |
4 |
tgtgacatatagataggtggatggatatattataagtacttaaaaagtgtgacgtttaaccaaaaatcatattaatannnnnnn-aggtatttaaatata |
102 |
Q |
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| T |
19506194 |
tgtgacatatagataggtggatggatatattataggtacttaaaaggtgtgacgtttaaccaaaaatcatattaatattttttttaggtatttaaatata |
19506095 |
T |
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| Q |
103 |
tgaagaccaaaagtgtaataatatcaactaataatatataatatttcatttccgtttaatgaagataaattgtaaaatccttctcaccacatcaaaaact |
202 |
Q |
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| T |
19506094 |
tgaagaccaaaagtgtaataatatcaactaataatatataatatttcatttccgtttaaagaagataaattgtaaaatccttctcaccacatcaaaaact |
19505995 |
T |
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| Q |
203 |
gcctctaagtctgcaaggaagcatgttaattttcctttaccataagcaacaattaaactgtctatg |
268 |
Q |
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| T |
19505994 |
gcctctaagtctgcaaggaagcatgttaattttcctttaccataagcaacaattaaactgtctatg |
19505929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 19482426 - 19482378
Alignment:
| Q |
216 |
caaggaagcatgttaattttcctttaccataagcaacaattaaactgtc |
264 |
Q |
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| T |
19482426 |
caaggaagcatgttaattttcctttcccataagctacagctaaactgtc |
19482378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 36182235 - 36182283
Alignment:
| Q |
220 |
gaagcatgttaattttcctttaccataagcaacaattaaactgtctatg |
268 |
Q |
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| T |
36182235 |
gaagcttgttaattttcctttaccataagcaacgactatactgtctatg |
36182283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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