View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_high_4 (Length: 503)

Name: NF11171A_high_4
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_high_4
NF11171A_high_4
[»] chr4 (1 HSPs)
chr4 (10-503)||(7933727-7934218)


Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 10 - 503
Target Start/End: Original strand, 7933727 - 7934218
Alignment:
Q  10 ggaaaaactatgttcggagcatgaagcatgaattagttactgatgctgcaacttacaagatatgaacaattttcagcatcttgaagtagcctatacatgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7933727 ggaaaaactatgttcggagcatgaagcatgaattagttactgatgctgcaacttacaagatatgaacaattttcagcatcttgaagtagcctatacatgc 7933826  T
Q  110 tccatttttgtctttttctcaagtactaatgcaattttataagtgtaaaactgcatgaagacaagagcaagtacttattagcttgaaccgttccattcgt 209  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7933827 tccatttttgtctttttcacaagtactaatgcaatttta--agtgtaaaactgcatgaagacaagagcaagtacttattagcttgaaccgttccattcgt 7933924  T
Q  210 cgtagaactctttgacaaactccaccatgaacttgtgccttctctcagccctcctttgcccagcctgaaatggatagcataaatcaaaactccttagcag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7933925 cgtagaactctttgacaaactccaccatgaacttgtgccttctctcagccctcctttgcccagcctgaaatggatagcataaatcaaaactccttggcag 7934024  T
Q  310 atttaatatatagggatatacttcttgacaaacttaacaaataaatgtannnnnnncaataatgcagcagaagaagttgaaacatgaaaagacnnnnnnn 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| |||||||||||||||||           
T  7934025 atttaatatatagggatatacttcttgacaaacttaacaaataaatgtatgtttttcaataatgcagcagaagaatttgaaacatgaaaagacaaaaaaa 7934124  T
Q  410 tgcacacttggnnnnnnncggtgaaaatttgataaggtctgaaaaaatcataatagagatgtaccttggttttcatcatgtctttaattttgag 503  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7934125 tgcacacttggtttttttcggtgaaaatttgataaggtctgaaaaaatcataatagagatgtaccttggttttcatcatgtctttaagtttgag 7934218  T

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