View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_high_6 (Length: 490)

Name: NF11171A_high_6
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_high_6
NF11171A_high_6
[»] chr7 (15 HSPs)
chr7 (25-480)||(24122006-24122461)
chr7 (43-281)||(24132455-24132693)
chr7 (51-281)||(24232527-24232757)
chr7 (25-272)||(24151095-24151342)
chr7 (44-269)||(24138389-24138614)
chr7 (45-249)||(24238059-24238263)
chr7 (41-249)||(24154266-24154474)
chr7 (42-250)||(24284008-24284217)
chr7 (39-279)||(3494819-3495059)
chr7 (30-241)||(24161168-24161379)
chr7 (146-263)||(21194261-21194378)
chr7 (39-224)||(24146118-24146303)
chr7 (92-213)||(21199524-21199645)
chr7 (132-240)||(23342851-23342959)
chr7 (135-209)||(23348065-23348139)
[»] chr2 (2 HSPs)
chr2 (30-213)||(28160509-28160692)
chr2 (56-279)||(10988778-10989001)
[»] chr1 (2 HSPs)
chr1 (58-275)||(15380143-15380360)
chr1 (39-279)||(3151024-3151263)
[»] chr6 (1 HSPs)
chr6 (406-462)||(1861430-1861486)
[»] chr3 (1 HSPs)
chr3 (132-172)||(1157403-1157443)
[»] chr8 (2 HSPs)
chr8 (414-457)||(29484932-29484975)
chr8 (409-457)||(24284213-24284261)
[»] chr5 (1 HSPs)
chr5 (403-457)||(2233170-2233224)


Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 25 - 480
Target Start/End: Original strand, 24122006 - 24122461
Alignment:
Q  25 ctttacaggtattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24122006 ctttgcaggtattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactc 24122105  T
Q  125 cttagccacaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgttt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24122106 cttagccacaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgttt 24122205  T
Q  225 atttctttgtccaccatgactctcaaggtaacttcgtcaccttgttcaactgattcacttaaatttccagcagccataggatagaaatcacagattaacc 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24122206 atttctttgtccaccatgactctcaaggtaacttcgtcaccttgttcaactgattcacttaaatttccagcagccataggatagaaatcacagattaacc 24122305  T
Q  325 tgagataagcaaattaggaatacatcattattaacttgtaaaatggatgctttctttgggtgtagtttttacacaatttcattttttggtcaaatagtct 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24122306 tgagataagcaaattaggaatacatcattattaacttgtaaaatggatgctttctttgggtgtagtttttacacaatttcattttttggtcaaatagtct 24122405  T
Q  425 ggtggttagaaattcacctcttaaaatgaataactgagataaatgagatgtctatg 480  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24122406 ggtggttagaaattcacctcttaaaatgaataactgagataagtgagatgtctatg 24122461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 43 - 281
Target Start/End: Original strand, 24132455 - 24132693
Alignment:
Q  43 atagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttga 142  Q
    ||||||| |||| |||||||||||  ||||||||||| |||| | | | |||||||||| ||||||||||||||||||||||||| |||||||||||||     
T  24132455 atagatattgttgatcaagatctgtcacactttgatacagtgaattaatgctgccaaatatcactgcttcaatatctgactcctttgccacaagtcttgc 24132554  T
Q  143 aatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatg 242  Q
    |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||| |||||||||||      
T  24132555 aatagtacctaaaggcaatgttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgctcttttgtttgtccaccaaa 24132654  T
Q  243 actctcaaggtaacttcgtcaccttgttcaactgattca 281  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  24132655 actctcaaggtaactttgtcaccttgttcaaatgattca 24132693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 51 - 281
Target Start/End: Original strand, 24232527 - 24232757
Alignment:
Q  51 tgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaatagtac 150  Q
    |||| |||||||| ||| ||||||||||| | ||  || | |||||||||| ||||||||||||||| ||| ||||||||||||| ||||| |||||| |    
T  24232527 tgttgatcaagatttgacacactttgatacaatgagctaatgctgccaaatttcactgcttcaatatttgagtccttagccacaaatcttgcaatagtcc 24232626  T
Q  151 ctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgactctcaa 250  Q
    |||| || || |||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||  |||||||||||||||  | |||||     
T  24232627 ctaaaggcaatgttaagaagctgaagagagcatcaacgaaatccttcccagcctcagcatacacaactttgttcttttctttgtccaccaaaattctcag 24232726  T
Q  251 ggtaacttcgtcaccttgttcaactgattca 281  Q
    |  ||| |  ||| |||||||||||||||||    
T  24232727 gcgaacattatcaacttgttcaactgattca 24232757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 25 - 272
Target Start/End: Original strand, 24151095 - 24151342
Alignment:
Q  25 ctttacaggtattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactc 124  Q
    |||| |||||||  ||||||||||| |||  ||||||||||   ||||||||||| |||| |||||  || |||||| |||||||||| |||| ||||||    
T  24151095 ctttgcaggtatgtgaccatagatattgtggatcaagatctttcacactttgatatagtgaactcaaactaccaaatttcactgcttcgatatttgactc 24151194  T
Q  125 cttagccacaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgttt 224  Q
     | |||||| ||||| | |||||||||||| || || |||||||||||||| || |||||||||||||||||||| || |||||  | | ||||||||||    
T  24151195 ttcagccacgagtctagcaatagtacctaaaggaaatgttaagaagctgaagagtgcatcaacaaaatccttcccagcctcagccaatagaactttgttt 24151294  T
Q  225 atttctttgtccaccatgactctcaaggtaacttcgtcaccttgttca 272  Q
     | ||||| || ||||  |||||||||||||||| |||| ||||||||    
T  24151295 ttctctttatcgaccaaaactctcaaggtaactttgtcaacttgttca 24151342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 44 - 269
Target Start/End: Original strand, 24138389 - 24138614
Alignment:
Q  44 tagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaa 143  Q
    |||||| |||| ||||||| |||| ||||||||||| |||| ||| | |||||||||||||||||||||||||| |||||| ||| |||| | || ||      
T  24138389 tagatattgttgatcaagaactgacacactttgatagagtgaacttatgctgccaaatctcactgcttcaatatttgactctttatccacgattcctgcg 24138488  T
Q  144 atagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatga 243  Q
    ||||||||||| ||||| |||||||| || |||||| ||||||||||||||||  |||| |||| | ||| |||||||||| | || ||||||||||  |    
T  24138489 atagtacctaagggtaatgttaagaaactcaaaagaacatcaacaaaatccttatctgcctcagtaaacagaactttgtttttctccttgtccaccaaaa 24138588  T
Q  244 ctctcaaggtaacttcgtcaccttgt 269  Q
    |||| | ||| |||| |||| |||||    
T  24138589 ctcttagggttactttgtcaacttgt 24138614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 45 - 249
Target Start/End: Complemental strand, 24238263 - 24238059
Alignment:
Q  45 agatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaa 144  Q
    ||||| |||||||||||||||| |||||||||||  |||| ||||||||| |||| | | || ||| | ||||  |||| ||||||| ||||||||| ||    
T  24238263 agatattgttcatcaagatctgctacactttgatgcagtgaactcaggcttccaactgttacagctccgatattcgactgcttagccgcaagtcttgcaa 24238164  T
Q  145 tagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgac 244  Q
    |||| ||||| || || |||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||  ||| |  ||||||||| ||    
T  24238163 tagttcctaaaggcaatgttaagaaactgaagagagcatcgacaaaatccttgcctgcctcagcatacacaactttgttcctttttccgtccaccataac 24238064  T
Q  245 tctca 249  Q
    |||||    
T  24238063 tctca 24238059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 41 - 249
Target Start/End: Original strand, 24154266 - 24154474
Alignment:
Q  41 ccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtctt 140  Q
    ||||||||| | ||| | ||||||||| ||||||||||| |||| ||| | |||   |||| | |||||||||||||  ||||| ||||  |||||||||    
T  24154266 ccatagatattcttctttaagatctgaaacactttgatacagtgaactaatgctattaaatttaactgcttcaatattcgactctttagatacaagtctt 24154365  T
Q  141 gaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccacca 240  Q
    | |||||||||||| || || ||||||||||| || ||| ||||||| ||||||||| ||||||||||||| |||||||| ||  |  ||||||||||||    
T  24154366 gcaatagtacctaaaggcaatgttaagaagcttaacagaacatcaacgaaatccttctctgcttcagcataaacaacttttttcctcgctttgtccacca 24154465  T
Q  241 tgactctca 249  Q
      |||||||    
T  24154466 aaactctca 24154474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 42 - 250
Target Start/End: Complemental strand, 24284217 - 24284008
Alignment:
Q  42 catagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctca-ctgcttcaatatctgactccttagccacaagtctt 140  Q
    |||| ||| |||| ||||||||||  |||||||||||| ||||  || | |||||||||  | | |||||||||||| ||| ||  |||| || ||||||    
T  24284217 cataaatattgttgatcaagatcttttacactttgatacagtgagctaatgctgccaaaattgaactgcttcaatatttgagtctgtagcaacgagtctt 24284118  T
Q  141 gaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccacca 240  Q
    | |||||| ||||| || ||||| ||||||||||| ||  ||||||||||||||||| ||||||||| ||| | |||||||||  ||||||| |||||||    
T  24284117 gcaatagtccctaagggcaaggtaaagaagctgaagaggacatcaacaaaatccttcactgcttcaggatatagaactttgttactttctttatccacca 24284018  T
Q  241 tgactctcaa 250  Q
    | ||||||||    
T  24284017 taactctcaa 24284008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 39 - 279
Target Start/End: Original strand, 3494819 - 3495059
Alignment:
Q  39 gaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtc 138  Q
    ||||||||||| ||||  ||||  | ||| ||||||||||| ||||  || | ||| |||||| ||||||||||||||| ||| |||||||  || | ||    
T  3494819 gaccatagatattgttggtcaaattttgacacactttgatatagtgagctaatgctaccaaatttcactgcttcaatatttgaatccttagaaactaatc 3494918  T
Q  139 ttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccac 238  Q
    ||| |||||||||||  || || |||||||| || || ||| |||| || |||||||| || ||||||||||||| |||| | ||| |||||||||| ||    
T  3494919 ttgcaatagtacctagaggcaatgttaagaaactaaagagaacatcgacgaaatccttaccggcttcagcatacagaactctatttctttctttgtcaac 3495018  T
Q  239 catgactctcaaggtaacttcgtcaccttgttcaactgatt 279  Q
     |  |||| |||| |||||| |||| |||||||||||||||    
T  3495019 taaaactcgcaagctaactttgtcaacttgttcaactgatt 3495059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 24161168 - 24161379
Alignment:
Q  30 caggtattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttag 129  Q
    |||||||| ||||| ||||| ||| |||| |||||||| |||||| | || |||| ||| | ||||||||| ||||||||||| |||| |||||| ||||    
T  24161168 caggtatttgaccagagatactgtgcatcgagatctgacacacttaggtacagtgaactaatgctgccaaacctcactgcttccatatttgactctttag 24161267  T
Q  130 ccacaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttc 229  Q
      |  ||||  | |||||| ||||  ||||| || ||||||||||||||| |||| ||||||||||| || || |||||||| | |||||| ||  ||||    
T  24161268 atatgagtcaagcaatagtccctagaggtaatgtcaagaagctgaaaagaacatcgacaaaatcctttccagcctcagcatatagaactttcttcctttc 24161367  T
Q  230 tttgtccaccat 241  Q
    ||||||||||||    
T  24161368 tttgtccaccat 24161379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 146 - 263
Target Start/End: Complemental strand, 21194378 - 21194261
Alignment:
Q  146 agtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgact 245  Q
    ||||||||| || || |||||||||||||| ||| | |||| ||||||||||||||| |||||||||| |||||||||  |||||||||||||||| ||     
T  21194378 agtacctaaaggcaatgttaagaagctgaatagaacttcaataaaatccttccctgcctcagcatacaaaactttgttcctttctttgtccaccataacc 21194279  T
Q  246 ctcaaggtaacttcgtca 263  Q
    ||||| ||||||| ||||    
T  21194278 ctcaatgtaactttgtca 21194261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 224
Target Start/End: Original strand, 24146118 - 24146303
Alignment:
Q  39 gaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtc 138  Q
    ||||| ||||| |||  |||||||||||| ||||||||||| | ||  || | |||||||||| |||||| |||||||| ||| ||||| ||||| |||     
T  24146118 gaccaaagatattgtgtatcaagatctgacacactttgatacaatgagctaatgctgccaaatttcactgattcaatatttgagtcctttgccacgagtt 24146217  T
Q  139 ttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgttt 224  Q
    ||| ||| || ||||| || || | ||||||||| |||||| |||||||||||||||| ||||| || ||| ||| ||||||||||    
T  24146218 ttgcaatggtccctaaaggcaatgataagaagctcaaaagaacatcaacaaaatcctttcctgcctctgcaaacagaactttgttt 24146303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 21199645 - 21199524
Alignment:
Q  92 gctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaa 191  Q
    |||||||||| |||  ||||||||||  |||||||  | ||| ||||||| |||||| ||||| || || |||||||||| ||| |||||||||||||||    
T  21199645 gctgccaaatttcatagcttcaatattcgactcctcggacactagtcttgcaatagttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaa 21199546  T
Q  192 tccttccctgcttcagcataca 213  Q
    ||||| ||||| ||||||||||    
T  21199545 tcctttcctgcctcagcataca 21199524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 23342851 - 23342959
Alignment:
Q  132 acaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctt 231  Q
    |||||||||| |||||| ||||| || || ||||||||||| || ||| |||| ||||| ||||| |||||||||||| |||  ||||||||  ||||||    
T  23342851 acaagtcttgcaatagttcctaaaggcaatgttaagaagctaaacagaacatccacaaagtcctttcctgcttcagcaaacaagactttgttggtttctt 23342950  T
Q  232 tgtccacca 240  Q
    ||| |||||    
T  23342951 tgttcacca 23342959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 23348065 - 23348139
Alignment:
Q  135 agtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagca 209  Q
    ||||||| |||||| |||||||| || |||||||| || || ||| |||| ||||| || |||||||||||||||    
T  23348065 agtcttgcaatagttcctaatggcaatgttaagaaactaaatagaacatcgacaaagtctttccctgcttcagca 23348139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 30 - 213
Target Start/End: Complemental strand, 28160692 - 28160509
Alignment:
Q  30 caggtattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttag 129  Q
    ||||||||||||||||||||| |||||||||||||||| || || ||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  28160692 caggtattggaccatagatagagttcatcaagatctgagacgctatgatgcagtgtactcaggctgccaaatttcactgcgtcaatatctgactccttag 28160593  T
Q  130 ccacaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcataca 213  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28160592 ccacaagtctagaaatagtacctaacagtaaggttaagaagctgaaaagagcaccaacaaaatccttccctgcttcagcataca 28160509  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 56 - 279
Target Start/End: Complemental strand, 10989001 - 10988778
Alignment:
Q  56 atcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaatagtacctaat 155  Q
    ||||||||||   ||||||||||| |||| ||| | ||| ||||||   ||||||||||||| ||||||  ||||||||||||| | |||||| |||||     
T  10989001 atcaagatctttcacactttgatatagtgaactaatgctaccaaattgaactgcttcaatatttgactctgtagccacaagtctcgcaatagtccctaaa 10988902  T
Q  156 ggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgactctcaaggtaa 255  Q
    || || |||||||||||||| ||| ||||||| ||||||||| |||| |||||||||| |||||||||  ||||||| |||||| | |||||||| ||||    
T  10988901 ggcaatgttaagaagctgaagagaacatcaacgaaatccttcactgcctcagcatacagaactttgttactttctttatccaccttaactctcaacgtaa 10988802  T
Q  256 cttcgtcaccttgttcaactgatt 279  Q
     || |||| ||| |||||| ||||    
T  10988801 ttttgtcaacttcttcaacagatt 10988778  T

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Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 58 - 275
Target Start/End: Complemental strand, 15380360 - 15380143
Alignment:
Q  58 caagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaatagtacctaatgg 157  Q
    ||||||| ||||||||||  || | ||  |||| ||| |||||| ||||||| || |||| ||||||||||||| ||||||||| |||||| ||||| ||    
T  15380360 caagatccgatacactttcgtacaatgagctcaagcttccaaatttcactgcgtcgatatttgactccttagccgcaagtcttgcaatagtccctaaagg 15380261  T
Q  158 taaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgactctcaaggtaact 257  Q
     ||  |||||||||||||||||| ||||||||||||||||||||| ||  |||| | |||||||||  ||||| | |||||||| | ||||||| |||||    
T  15380260 aaatattaagaagctgaaaagagtatcaacaaaatccttccctgcctctacatatagaactttgttcctttctctatccaccataaatctcaagctaact 15380161  T
Q  258 tcgtcaccttgttcaact 275  Q
    |||||| |||||||||||    
T  15380160 tcgtcaacttgttcaact 15380143  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 279
Target Start/End: Complemental strand, 3151263 - 3151024
Alignment:
Q  39 gaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtc 138  Q
    ||||||||||| |||| ||||||||| ||||||| | |||| | ||  || | |||||||| | ||||||||||||||| |||||||| ||  |  ||||    
T  3151263 gaccatagatattgttgatcaagatccgatacacctcgatacaatgagcttatgctgccaagtttcactgcttcaatatttgactcctgagaaatgagtc 3151164  T
Q  139 ttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccac 238  Q
    ||| |||||| ||||  ||||| ||||| || || |||||| |||| || ||||||||||| || |||||||| | ||||| |||  |||||||||||||    
T  3151163 ttgcaatagtccctagaggtaatgttaaaaaactcaaaagaacatcgacgaaatccttcccagcctcagcatatagaactt-gttcctttctttgtccac 3151065  T
Q  239 catgactctcaaggtaacttcgtcaccttgttcaactgatt 279  Q
    ||| | ||||||| |||||| |||| |||||||||| ||||    
T  3151064 cataattctcaagctaactttgtcaacttgttcaacggatt 3151024  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 462
Target Start/End: Complemental strand, 1861486 - 1861430
Alignment:
Q  406 ttttttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataactgag 462  Q
    |||||| ||||| |||||| |||| || |||||||||||||||||||||||| ||||    
T  1861486 tttttttgtcaagtagtcttgtggctaaaaattcacctcttaaaatgaataagtgag 1861430  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 1157403 - 1157443
Alignment:
Q  132 acaagtcttgaaatagtacctaatggtaaggttaagaagct 172  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  1157403 acaagtcttgcaatggtacctaatggtaaggttaagaagct 1157443  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 457
Target Start/End: Complemental strand, 29484975 - 29484932
Alignment:
Q  414 tcaaatagtctggtggttagaaattcacctcttaaaatgaataa 457  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||    
T  29484975 tcaaatagtctagtggctagatattcacctcttaaaatgaataa 29484932  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 24284213 - 24284261
Alignment:
Q  409 tttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataa 457  Q
    |||| |||||||| || |||| |||| ||||||||||||||||||||||    
T  24284213 tttgttcaaatagcctagtggctagacattcacctcttaaaatgaataa 24284261  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 457
Target Start/End: Complemental strand, 2233224 - 2233170
Alignment:
Q  403 tcattttttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataa 457  Q
    |||||||||||||||||| | |  |||||| ||||||| ||||||||||||||||    
T  2233224 tcattttttggtcaaataatttattggttaaaaattcaactcttaaaatgaataa 2233170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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