View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_10 (Length: 474)
Name: NF11171A_low_10
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_10 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 13 - 474
Target Start/End: Complemental strand, 553413 - 552952
Alignment:
| Q |
13 |
aatatttaataattgatgagttgagtcttgtttgatcaatttttcttttaagtattgacaatagtttcaataaaaatatacaaatgtcttaatatgttgt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
553413 |
aatatttaataattgatgagttgagtcttgtttgatcaatttttcttttaagtattgacaatagtttcaataaaaatatacaaatgtcttattatgttgt |
553314 |
T |
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| Q |
113 |
gttgataaagaaaaatgttaaaaactagttataaaactgcttttgatggttgaaaataattgtgacttttaggcttattgcgttgggtgtagaatcgata |
212 |
Q |
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| T |
553313 |
gttgataaagaaaaatgttaaaaactagttataaaactgcttttgatggttgaaaataattgtgacttttaggcttattgcgttgggtgtagaatcgata |
553214 |
T |
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| Q |
213 |
gatgtcacagcagtagcataaggtgagcttcatctccaatattgtagtcctaattcatctccagcagttacagattccagagcaaatgttactgtcatag |
312 |
Q |
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| T |
553213 |
gatgtcacagcagtagcataaggtgagcttcatctccaatattgtagtcctaattcatctccagcagttacagattccagagcaaatgttactgtcatag |
553114 |
T |
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| Q |
313 |
gtgaaagacattttctaaatgaacaatatacaacttaaataattcttgaaacaaatctacaacttgaaccatgtttagatatagagcattatttgcttca |
412 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
553113 |
gtgagagacattttctaaatgaacaatctacaacttaaataattcttgaaacaaatctacaacttgaaccatgtttagatatagagcattatttgcttca |
553014 |
T |
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| Q |
413 |
cctggattttagcattgcaaatatgaattaaaacattgagttgtgttatttgaacatccata |
474 |
Q |
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| T |
553013 |
cctggattttagcattgcaaatatgaattaaaacattgagttgtgttatttgaacatccata |
552952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 474
Target Start/End: Original strand, 36670892 - 36670926
Alignment:
| Q |
440 |
ttaaaacattgagttgtgttatttgaacatccata |
474 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
36670892 |
ttaaaaaattgagttgtgttatttgaacatccata |
36670926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 474
Target Start/End: Original strand, 53786099 - 53786127
Alignment:
| Q |
446 |
cattgagttgtgttatttgaacatccata |
474 |
Q |
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| T |
53786099 |
cattgagttgtgttatttgaacatccata |
53786127 |
T |
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