View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_100 (Length: 290)

Name: NF11171A_low_100
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_100
NF11171A_low_100
[»] chr8 (14 HSPs)
chr8 (121-282)||(39065466-39065621)
chr8 (186-267)||(28462534-28462616)
chr8 (160-248)||(39209327-39209417)
chr8 (194-282)||(39534137-39534225)
chr8 (207-282)||(14110626-14110700)
chr8 (189-282)||(20821916-20822009)
chr8 (199-282)||(900237-900321)
chr8 (186-251)||(41675662-41675727)
chr8 (193-282)||(41726922-41727011)
chr8 (187-282)||(13873723-13873818)
chr8 (185-248)||(44648928-44648991)
chr8 (196-262)||(42654633-42654699)
chr8 (186-251)||(29795562-29795627)
chr8 (229-282)||(37919425-37919478)
[»] chr3 (15 HSPs)
chr3 (156-281)||(44291197-44291316)
chr3 (158-282)||(15671079-15671204)
chr3 (184-282)||(42163595-42163694)
chr3 (186-279)||(44041315-44041409)
chr3 (188-282)||(27144025-27144120)
chr3 (186-282)||(17109525-17109622)
chr3 (214-282)||(43862967-43863035)
chr3 (190-251)||(49711001-49711062)
chr3 (194-253)||(23208143-23208203)
chr3 (186-282)||(35322035-35322129)
chr3 (196-251)||(43652470-43652525)
chr3 (198-282)||(32720523-32720608)
chr3 (195-248)||(43014707-43014761)
chr3 (217-282)||(49419074-49419139)
chr3 (193-282)||(4020124-4020213)
[»] chr7 (10 HSPs)
chr7 (185-282)||(22035758-22035856)
chr7 (196-282)||(41434727-41434813)
chr7 (184-282)||(45907023-45907121)
chr7 (188-283)||(16861702-16861797)
chr7 (184-237)||(27364663-27364717)
chr7 (195-282)||(36636008-36636095)
chr7 (195-282)||(8117444-8117531)
chr7 (190-283)||(19689524-19689618)
chr7 (188-282)||(21798823-21798917)
chr7 (187-236)||(34993090-34993139)
[»] scaffold1372 (2 HSPs)
scaffold1372 (184-251)||(1260-1327)
scaffold1372 (218-252)||(1376-1410)
[»] chr1 (19 HSPs)
chr1 (184-282)||(48282880-48282978)
chr1 (189-282)||(33827818-33827912)
chr1 (189-282)||(33840053-33840147)
chr1 (189-251)||(20471326-20471388)
chr1 (189-251)||(20560149-20560211)
chr1 (190-251)||(30627610-30627671)
chr1 (191-282)||(50468802-50468894)
chr1 (188-282)||(31884453-31884547)
chr1 (191-282)||(15419646-15419738)
chr1 (187-282)||(40391209-40391305)
chr1 (208-282)||(50127361-50127435)
chr1 (217-282)||(44109093-44109158)
chr1 (193-251)||(26855824-26855883)
chr1 (184-250)||(19066918-19066984)
chr1 (184-250)||(19114808-19114874)
chr1 (195-282)||(13969099-13969186)
chr1 (193-239)||(18786447-18786493)
chr1 (195-236)||(34347227-34347268)
chr1 (185-282)||(46295861-46295958)
[»] chr5 (9 HSPs)
chr5 (185-282)||(14863362-14863459)
chr5 (187-282)||(2611140-2611236)
chr5 (184-282)||(7609529-7609627)
chr5 (193-282)||(11320151-11320240)
chr5 (193-282)||(21052626-21052715)
chr5 (186-250)||(12187241-12187305)
chr5 (184-282)||(35185282-35185380)
chr5 (191-282)||(22180251-22180342)
chr5 (184-238)||(18677915-18677970)
[»] chr6 (3 HSPs)
chr6 (188-282)||(17506292-17506386)
chr6 (191-282)||(21809802-21809893)
chr6 (196-249)||(4803215-4803268)
[»] chr4 (10 HSPs)
chr4 (191-282)||(31241947-31242039)
chr4 (190-282)||(31647747-31647839)
chr4 (185-251)||(19147138-19147204)
chr4 (201-282)||(38320124-38320206)
chr4 (189-251)||(47397662-47397724)
chr4 (188-253)||(38319533-38319599)
chr4 (193-282)||(16341100-16341189)
chr4 (190-237)||(16004449-16004496)
chr4 (200-251)||(20542600-20542651)
chr4 (157-203)||(48743577-48743622)
[»] scaffold0117 (1 HSPs)
scaffold0117 (203-282)||(16838-16917)
[»] scaffold0886 (1 HSPs)
scaffold0886 (184-282)||(1094-1192)
[»] scaffold0006 (1 HSPs)
scaffold0006 (185-282)||(38827-38924)
[»] scaffold0034 (1 HSPs)
scaffold0034 (184-251)||(22413-22480)
[»] chr2 (8 HSPs)
chr2 (190-253)||(18243299-18243363)
chr2 (184-278)||(19889775-19889870)
chr2 (186-248)||(40574134-40574196)
chr2 (190-239)||(23760588-23760637)
chr2 (200-278)||(21646482-21646560)
chr2 (191-282)||(23788402-23788493)
chr2 (208-282)||(37913017-37913091)
chr2 (146-203)||(31807729-31807785)
[»] scaffold0078 (1 HSPs)
scaffold0078 (195-253)||(861-920)
[»] scaffold0079 (1 HSPs)
scaffold0079 (193-282)||(51672-51761)
[»] scaffold0068 (1 HSPs)
scaffold0068 (184-250)||(52070-52136)


Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 121 - 282
Target Start/End: Original strand, 39065466 - 39065621
Alignment:
Q  121 gttaactcacatccctgatacactagttaaaaaacaaggg-tcttgttgaccagtgccccggggccggggcactggttaaggaatctataaatataattt 219  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||     |||||||||||||  |||||||||| |||||    
T  39065466 gttaactcacatccctgatacactagttaaaaaacaaggggtcttgttgaccagtgcttcgggg-----gcactggttaagg--tctataaatagaattt 39065558  T
Q  220 ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||||  ||||||||||||||||||||||| | | ||||||||||| ||||||||||||||    
T  39065559 ctgtcttaaaaatataaactgtcactttttatcaagtaataatgacattattttttaataaaa 39065621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 28462534 - 28462616
Alignment:
Q  186 ggggcactggttaaggaatctataaatataatttct-gtcttggaaatataaactgtcactttttattacgcaataatgacat 267  Q
    |||||||||||||| ||||||||||||| ||||| | |||||||||||||||||| ||||||||||||| | |||||| ||||    
T  28462534 ggggcactggttaaagaatctataaatagaattttttgtcttggaaatataaactatcactttttattaagtaataattacat 28462616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 39209327 - 39209417
Alignment:
Q  160 gtcttgttgaccagtgccccggggccgg-ggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttt 248  Q
    |||||||| |||||||| || ||| ||| |||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||    
T  39209327 gtcttgttaaccagtgctcctgggacggtggcactagttaaggaatttataaatagaattttctgttttggaaatataaactgtcactttt 39209417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 39534137 - 39534225
Alignment:
Q  194 ggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||| |||||||||| || ||||||||||||| ||||||||||||||||  ||||| | | |||||| |||| | ||||||||||||    
T  39534137 ggttaaagaatctataattagaatttctgtcttgaaaatataaactgtcaccctttatcaagtaataattacattactttttaataaaa 39534225  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 282
Target Start/End: Original strand, 14110626 - 14110700
Alignment:
Q  207 ataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||| |||||| ||||||||||| ||||||||||| || | |||||| |||||| ||||||||||||    
T  14110626 ataaatataatttttgtcttagaaatataaaccgtcacttttta-taagtaataattacataactttttaataaaa 14110700  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 20822009 - 20821916
Alignment:
Q  189 gcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||| ||||| |||||||| ||| ||||  ||||||  ||||||||| ||||||||||||||| | |||||| |||| | ||||||||||||    
T  20822009 gcactgattaagaaatctatagatagaattgttgtcttaaaaatataaattgtcactttttattaagtaataattacattactttttaataaaa 20821916  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 900237 - 900321
Alignment:
Q  199 aggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||| ||||||||||||||| |||||||| |||| |||||||||| ||||||||| | |||||| | || | ||||||||||||    
T  900237 aggaaactataaatataattttctgtcttgaaaatttaaactgtcattttttattaagtaataattatattactttttaataaaa 900321  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 41675662 - 41675727
Alignment:
Q  186 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||| | |||||||||||| ||||| ||||||||| ||| ||||||||||| ||| |||||||    
T  41675662 ggggcaccgattaaggaatctacaaatagaatttctgttttgaaaatataaactatcattttttat 41675727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 41727011 - 41726922
Alignment:
Q  193 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||||| ||||| || || ||||||||||||||||| ||| | ||||||| | | ||| || ||||| |||||| ||||||    
T  41727011 tggttaaggaatctacaaataaaaattttgtcttggaaatataaaatgttattttttataaagtaatgattacatagttttttcataaaa 41726922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 282
Target Start/End: Complemental strand, 13873818 - 13873723
Alignment:
Q  187 gggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||| || |||||||||||||||||| ||||| |||||| |||||||||  ||| | |||| |||| | ||| ||  ||||||||||| ||||||    
T  13873818 gggcaatgattaaggaatctataaataaaatttttgtcttagaaatataagatgttatttttaattaagtaatgattgcataattttttcataaaa 13873723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 44648928 - 44648991
Alignment:
Q  185 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttt 248  Q
    ||||||| ||||||||||||||| ||||| || || ||||||| ||||||||| ||| ||||||    
T  44648928 cggggcaatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttactttt 44648991  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 42654699 - 42654633
Alignment:
Q  196 ttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataat 262  Q
    |||| |||||||| |||| ||||| |||||| |||||||||||| ||| ||||||||| | ||||||    
T  42654699 ttaaagaatctatcaataaaatttttgtcttagaaatataaactatcattttttattaagtaataat 42654633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 29795627 - 29795562
Alignment:
Q  186 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||| ||||||||||||| | ||||| ||||| | ||||  || ||||||||||||||||||||    
T  29795627 ggggcattggttaaggaatccaaaaatagaatttttatcttaaaactataaactgtcactttttat 29795562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 37919478 - 37919425
Alignment:
Q  229 aaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||||| ||||||||| | |||||| |||| | ||||||||||||    
T  37919478 aaatataaactgtcattttttattaagtaataattacattactttttaataaaa 37919425  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 44291197 - 44291316
Alignment:
Q  156 aagggtcttgttgaccagtgccccggggccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacg 255  Q
    |||||||||||| |||||||||||||      |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  44291197 aagggtcttgttaaccagtgccccgg------ggcactggttaaggaatctataaatagaatttctgtcttggaaatataaactgtcactttttattaag 44291290  T
Q  256 caataatgacataattttttaataaa 281  Q
     |||||| |||| | |||||||||||    
T  44291291 taataattacattactttttaataaa 44291316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 158 - 282
Target Start/End: Original strand, 15671079 - 15671204
Alignment:
Q  158 gggtcttgttgaccagtgcccc-ggggccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgc 256  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | |     
T  15671079 gggtcttgttaaccagtgcccccggggcgggggcactggttaaggaatctataaataaaatttttgtcttcgaaatataaactgtcactttttatcaagt 15671178  T
Q  257 aataatgacataattttttaataaaa 282  Q
    |||||| |||| | ||||||||||||    
T  15671179 aataattacattactttttaataaaa 15671204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 42163595 - 42163694
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||| | |||||| |||| | ||||||||||||    
T  42163595 ccggggcactggttaaggaatctattaatagaattttctgtcttggaaatataaaccgtcactttttattaagtaataattacattactttttaataaaa 42163694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 279
Target Start/End: Original strand, 44041315 - 44041409
Alignment:
Q  186 ggggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaata 279  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| | |||||| |||| | |||||||||    
T  44041315 ggggcactggttaatgaatctataaatagaattttctgtcttggtaatataaactgtcactttttattaagtaataattacattactttttaata 44041409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 27144120 - 27144025
Alignment:
Q  188 ggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||| |||||||||||| ||||| |||| || |||||||||||||| ||||||||||| | |||||| |||| ||||||||||||||    
T  27144120 ggcactggttaagaaatctataaatagaattttctgtattagaaatataaactgtgactttttattaagtaataattacattattttttaataaaa 27144025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 282
Target Start/End: Original strand, 17109525 - 17109622
Alignment:
Q  186 ggggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||| ||||||| ||| |||||||| ||||| || ||||||||||||||||||| || |||||||| | |||||| |||||| ||||||||||||    
T  17109525 ggggcacgggttaagaaatttataaatagaattttctatcttggaaatataaactgtaacattttattaagtaataattacataactttttaataaaa 17109622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 43863035 - 43862967
Alignment:
Q  214 taatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||||||||||||||||||||||||||||| ||||||| | |||||| |||| | ||||||||||||    
T  43863035 taatttctgtcttggaaatataaactgtcactctttattaagtaataattacattactttttaataaaa 43862967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 49711062 - 49711001
Alignment:
Q  190 cactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| ||| | |||||||    
T  49711062 cactggttaaggaatctataaatagaatttctgtcttagaaatataaaatgttattttttat 49711001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 23208143 - 23208203
Alignment:
Q  194 ggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttatta 253  Q
    ||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  23208143 ggttaagaaatctataaatagaattttctgtcttgaaaatataaactgtcactttttatta 23208203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 35322129 - 35322035
Alignment:
Q  186 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||| |||||||  |||||||||||| ||||| |||||| |||||||||||| ||||||||||||| | |||||| |||| | ||||||||||||    
T  35322129 ggggcattggttaaaaaatctataaatagaattt-tgtcttagaaatataaact-tcactttttattaagtaataattacattactttttaataaaa 35322035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 43652470 - 43652525
Alignment:
Q  196 ttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||||| |||||||    
T  43652470 ttaaggaatctataaataaaatttctatcttggaaatataatctgtcattttttat 43652525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 32720523 - 32720608
Alignment:
Q  198 aaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||| |||| ||||| || ||||| ||||||||||||||||| ||||||| | |||||| | || ||||||||||||||    
T  32720523 aaggaatctattaatagaattttctttcttgaaaatataaactgtcactatttattaagtaataattatattattttttaataaaa 32720608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 43014761 - 43014707
Alignment:
Q  195 gttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttt 248  Q
    ||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  43014761 gttaaagaatttataaatataattttctgtcttggaaatataaattgtcactttt 43014707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 49419074 - 49419139
Alignment:
Q  217 tttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||| || |||||||||| |||||||||||||||   |||||| |||||| ||||||||||||    
T  49419074 tttctgtattagaaatataaattgtcactttttattaactaataattacataactttttaataaaa 49419139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 4020213 - 4020124
Alignment:
Q  193 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||||| ||||| || || ||||||| ||||||||| ||| | |||| |||| | ||| || ||| |||||||| ||||||    
T  4020213 tggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttaattttgattaagtaattattacacaattttttcataaaa 4020124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 22035856 - 22035758
Alignment:
Q  185 cggggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| || | |||||| |||| ||||||||||||||    
T  22035856 cggggcactggttaatgaatctataaatagaattttctgtcttggaaatataaactgtcactttttaataagtaataattacattattttttaataaaa 22035758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 282
Target Start/End: Complemental strand, 41434813 - 41434727
Alignment:
Q  196 ttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |   |||||| |||| ||||||||||||||    
T  41434813 ttaaagaatctataaatataatttctgtcttagaaatataaactgtcactttttatcaaataataattacattattttttaataaaa 41434727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 45907023 - 45907121
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||| |||||||||||||||||||| | ||| ||||||| ||||||||||||||||||||||| | | |||||| |||| | ||||||||||||    
T  45907023 ccggggcacgggttaaggaatctataaatagattttttgtcttgtaaatataaactgtcactttttatcaagtaataattacattactttttaataaaa 45907121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 16861797 - 16861702
Alignment:
Q  188 ggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaac 283  Q
    ||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||||   | |||| |||| | |||||||||||||    
T  16861797 ggcaccggttaagaaatctataaatagaatttatgtcttggaaatataaactgtcattttttattaaatattaattacattactttttaataaaac 16861702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 27364717 - 27364663
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataa-tttctgtcttggaaatataaa 237  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||||||||||    
T  27364717 ccggggcactggttaaggaatctataaatagaattttatgtcttggaaatataaa 27364663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 36636008 - 36636095
Alignment:
Q  195 gttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||||||| |||||||| ||||| || ||||||| |||||||| ||||| |||||||| | |||||| |||| ||||||||||||||    
T  36636008 gttaaggaat-tataaatagaattttctatcttggagatataaacggtcaccttttattaagtaataattacattattttttaataaaa 36636095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 8117444 - 8117531
Alignment:
Q  195 gttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||| |||||||||||||| ||||| ||||||| ||||||||| ||| | |||||||||   |||||| |||| | ||||||||||||    
T  8117444 gttatggaatctataaatagaatttatgtcttgaaaatataaattgttattttttattaaataataattacattactttttaataaaa 8117531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 19689618 - 19689524
Alignment:
Q  190 cactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaac 283  Q
    ||||| |||||||||||||||||| || ||||| ||||| ||||||||||| ||||||  |||||   |||||| |||| | |||||||||||||    
T  19689618 cactgattaaggaatctataaatacaactttctatcttgtaaatataaactatcacttcgtattaaataataattacattactttttaataaaac 19689524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 21798917 - 21798823
Alignment:
Q  188 ggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||| ||||||| |||| | ||||| ||||| |||||||||| |||||||||||| |||| |||| | |||||| |||| | || |||||||||    
T  21798917 ggcacgggttaagaaatccaaaaatagaatttatgtcttggaattataaactgtcatttttcattaagtaataattacattacttcttaataaaa 21798823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 34993090 - 34993139
Alignment:
Q  187 gggcactggttaaggaatctataaatataatttctgtcttggaaatataa 236  Q
    ||||| ||||||||||||||| |||||||| || ||||||| ||||||||    
T  34993090 gggcaatggttaaggaatctacaaatataaattttgtcttgaaaatataa 34993139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 1260 - 1327
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1260 ccggggcacgggttaaggaatctataaatagaatttctgtcttggaaatataaactgtcactttttat 1327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 1376 - 1410
Alignment:
Q  218 ttctgtcttggaaatataaactgtcactttttatt 252  Q
    |||||||||||||||||||||||||||||| ||||    
T  1376 ttctgtcttggaaatataaactgtcactttatatt 1410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 48282880 - 48282978
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| | | |||||| |||| | |||||| |||||    
T  48282880 ccggggcactggttaaggaatctataaatagaatttctgtcttgaaaatataatctgtcactttttatcaggtaataattacattactttttagtaaaa 48282978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 33827818 - 33827912
Alignment:
Q  189 gcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||| | |||||| |||| | ||||||||||||    
T  33827818 gcactggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttattaagtaataattacattactttttaataaaa 33827912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 33840147 - 33840053
Alignment:
Q  189 gcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||| | |||||| |||| | ||||||||||||    
T  33840147 gcactggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttattaagtaataattacattactttttaataaaa 33840053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 20471326 - 20471388
Alignment:
Q  189 gcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||| |||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  20471326 gcactggttaagaaatctataaatataattgttgtcttagaaatataaactgtcactttttat 20471388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 20560211 - 20560149
Alignment:
Q  189 gcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||||||||| |||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  20560211 gcactggttaagaaatctataaatataattgttgtcttagaaatataaactgtcactttttat 20560149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 30627610 - 30627671
Alignment:
Q  190 cactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  30627610 cactgattaaggaatctataaatagaatttatgtcttggaaatataacctgtcactttttat 30627671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 50468802 - 50468894
Alignment:
Q  191 actggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||||||||||||| ||||| || |||| ||||||||| |||||| ||||||||| | |||||| |||| | ||||||||||||    
T  50468802 actggttaaggaatctataaataaaattttctatcttagaaatataacctgtcattttttattaagtaataattacattactttttaataaaa 50468894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 31884453 - 31884547
Alignment:
Q  188 ggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||| |||||| |||||||||||| ||||||| |||||||||||||||||| || ||||||| |   |||||| |||| | ||||||||||||    
T  31884453 ggcacttgttaagaaatctataaatagaatttctatcttggaaatataaactgacattttttatcaaataataattacattactttttaataaaa 31884547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 15419646 - 15419738
Alignment:
Q  191 actggttaaggaatctataaatataatttct-gtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||| ||||||||||||| ||||| | || ||||||||||||||||| ||||||||||| | |||||| | || | ||||||||||||    
T  15419646 actggttaatgaatctataaatagaattttttgtattggaaatataaactgttactttttattaagtaataattatattactttttaataaaa 15419738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 40391209 - 40391305
Alignment:
Q  187 gggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||||| ||||| |||||||||||  ||||| |||||||| ||||||||||||||||||||||| | | |||||| |||| | ||||| ||||||    
T  40391209 gggcactgattaagaaatctataaatcgaattttctgtcttgaaaatataaactgtcactttttatcaagtaataattacattactttttgataaaa 40391305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 50127361 - 50127435
Alignment:
Q  208 taaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||| ||||||||||||||||||||||||||||| |||||||   | |||||| |||| | ||||||||||||    
T  50127361 taaatagaatttctgtcttggaaatataaactgtcattttttatcgagtaataattacattactttttaataaaa 50127435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 44109093 - 44109158
Alignment:
Q  217 tttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||| |||||||||||||||||||| |||||||||| | |||||| |||| | ||||||||||||    
T  44109093 tttctatcttggaaatataaactgtccctttttattaagtaataattacattactttttaataaaa 44109158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 26855824 - 26855883
Alignment:
Q  193 tggttaaggaatctataaatataatttct-gtcttggaaatataaactgtcactttttat 251  Q
    ||||||| ||||||||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  26855824 tggttaaagaatctataaatagaattttttgtcttggaaatataatctgtcactttttat 26855883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 19066984 - 19066918
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttta 250  Q
    |||| ||||| |||||| |||||||||||| ||||  |||||| |||||||||| ||||||||||||    
T  19066984 ccggagcactagttaagaaatctataaatagaattgttgtcttagaaatataaattgtcacttttta 19066918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 19114874 - 19114808
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttta 250  Q
    |||| ||||| |||||| |||||||||||| ||||  |||||| |||||||||| ||||||||||||    
T  19114874 ccggagcactagttaagaaatctataaatagaattgttgtcttagaaatataaattgtcacttttta 19114808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 13969099 - 13969186
Alignment:
Q  195 gttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||| ||||| || || ||||||| ||||||||| ||| |||||| |||| | ||| || ||| |||||||| ||||||    
T  13969099 gttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttaattaagtaattattacacaattttttcataaaa 13969186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 18786447 - 18786493
Alignment:
Q  193 tggttaaggaatctataaatataatttctgtcttggaaatataaact 239  Q
    |||||||||||||||||| || || || |||||||||||||||||||    
T  18786447 tggttaaggaatctataagtaaaacttttgtcttggaaatataaact 18786493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 34347227 - 34347268
Alignment:
Q  195 gttaaggaatctataaatataatttctgtcttggaaatataa 236  Q
    ||||| |||||||||||||||| || ||||||||||||||||    
T  34347227 gttaaagaatctataaatataaattttgtcttggaaatataa 34347268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 46295861 - 46295958
Alignment:
Q  185 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||| ||||||||||||||| ||||| || || | ||||| ||||||||| ||| |||||| || | | ||| |||||| || ||||| ||||||    
T  46295861 cggggcaatggttaaggaatctacaaataaaaattttatcttgaaaatataaaatgttacttttgatcaagtaatcatgacacaactttttcataaaa 46295958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 14863459 - 14863362
Alignment:
Q  185 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| | | |||||| |||| | ||||||||||||    
T  14863459 cgggacactggttaaagaatctataaatataatttatgtcttgaaaatataaactgtcactttttatcaagtaataattacattaatttttaataaaa 14863362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 2611140 - 2611236
Alignment:
Q  187 gggcactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||||||| |||||||||||||||| | |||||| |||| | ||||||||||||    
T  2611140 gggcactggttaaggaatctataaatagaaatttatgtcttggaaatataagctgtcactttttattaagtaataattacattactttttaataaaa 2611236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 7609529 - 7609627
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||| ||||||||||||||| || ||||||||| ||||||||||||||| ||| ||||||| | | |||||| |||| | ||||||||||||    
T  7609529 ccggggcactgattaaggaatctataattagaatttctgttttggaaatataaactatcattttttatcaagtaataattacattactttttaataaaa 7609627  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 11320240 - 11320151
Alignment:
Q  193 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||||||||||||||| | | |||||| |||| | ||||||||||||    
T  11320240 tggttaaggaatctataattaaaatttctatcttagaaatataaactgtcactttttatcaagtaataattacattactttttaataaaa 11320151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 21052626 - 21052715
Alignment:
Q  193 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||||||||| |||||||| ||||||  ||||| ||||||||||||||||||||||| | | |||||| |||| ||||||||||||||    
T  21052626 tggttaaggaatttataaataaaatttccatcttgcaaatataaactgtcactttttatcaagtaataattacatgattttttaataaaa 21052715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 12187305 - 12187241
Alignment:
Q  186 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttta 250  Q
    |||||| ||||||| ||||||| ||||| ||||| |||||||||||||||||| |||||||||||    
T  12187305 ggggcattggttaaagaatctacaaatagaatttttgtcttggaaatataaacggtcacttttta 12187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 282
Target Start/End: Complemental strand, 35185380 - 35185282
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttc-tgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||| ||||||||||| ||||||||||||| |||||  ||||||| |||||||||||||||| |||||||  | |||||| |||| | ||||||||||||    
T  35185380 ccggagcactggttaaagaatctataaatagaattttatgtcttgaaaatataaactgtcac-ttttatttagtaataattacattactttttaataaaa 35185282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 22180251 - 22180342
Alignment:
Q  191 actggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||| |||||||||||||||||| || ||||| | ||| ||||||||||||||| |||||||||   |||||| | || ||||||||||||||    
T  22180251 actgattaaggaatctataaataaaattttctattttgaaaatataaactgtca-tttttattaaataataattatattattttttaataaaa 22180342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 18677915 - 18677970
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataa-tttctgtcttggaaatataaac 238  Q
    |||| ||||||||||||||||||||||||| || ||||| ||||| ||||||||||    
T  18677915 ccggagcactggttaaggaatctataaatagaattttctatcttgaaaatataaac 18677970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 17506386 - 17506292
Alignment:
Q  188 ggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||| | | |||||| |||| | ||||||||||||    
T  17506386 ggcactggttaagaaatctataaatataatttatattttggaaatataaactgtcactttttatcaagtaataattacattactttttaataaaa 17506292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 21809802 - 21809893
Alignment:
Q  191 actggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||||||| |||||||||||| ||||  |||||| |||||||||| ||||||||||||| | | |||||| || | | ||||||||||||    
T  21809802 actggttaagaaatctataaatagaattgttgtcttagaaatataaattgtcactttttatcaagtaataattacgttactttttaataaaa 21809893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 4803268 - 4803215
Alignment:
Q  196 ttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttt 249  Q
    |||| ||||||||||||| ||||||||| || |||||||||||||  |||||||    
T  4803268 ttaaagaatctataaatagaatttctgtgtttgaaatataaactgctacttttt 4803215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 31241947 - 31242039
Alignment:
Q  191 actggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||||||||||   |||||| |||| | ||||||||||||    
T  31241947 actggttaaggaatctataaatagaattttctgtcttgaaaatataaacggtcactttttattaaataataattacattactttttaataaaa 31242039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 31647839 - 31647747
Alignment:
Q  190 cactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||| |||| ||||||||||||| |||||||||||| |||||||||||| ||||||||||| | | |||||| |||| | ||||||||||||    
T  31647839 cactgattaaagaatctataaatagaatttctgtcttagaaatataaactatcactttttatcaagtaataattacattactttttaataaaa 31647747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 19147138 - 19147204
Alignment:
Q  185 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||| ||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  19147138 cgggacactggttaagaaatctataagtagaatttctgtcttgaaaatataaactgtcactttttat 19147204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 38320124 - 38320206
Alignment:
Q  201 gaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| | |||||| |||| | ||||||||||||    
T  38320124 gaatctataaatagaattttctgtcttggaaatataaactgtcacttcttattaagtaataattacattactttttaataaaa 38320206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 47397724 - 47397662
Alignment:
Q  189 gcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||    
T  47397724 gcactggttaaggaatctataaatagaatttctattttagaaatataaactgtcactttttat 47397662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 38319533 - 38319599
Alignment:
Q  188 ggcactggttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttatta 253  Q
    |||| ||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||    
T  38319533 ggcattggttaaggaatctataaatagaattttctgttttgaaaatataaactgtcactttttatta 38319599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 16341100 - 16341189
Alignment:
Q  193 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||||||||| || ||||| ||||| |||||| |||||||||| ||| |||||| |||| | ||| || |||||||||||| ||||||    
T  16341100 tggttaaggaatttacaaataaaatttttgtctttgaaatataaaatgttacttttgattaagtaatgattacataattttttcataaaa 16341189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 16004496 - 16004449
Alignment:
Q  190 cactggttaaggaatctataaatataatttctgtcttggaaatataaa 237  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  16004496 cactgcttaagaaatctataaatagaatttctgtcttggaaatataaa 16004449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 20542600 - 20542651
Alignment:
Q  200 ggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    |||||| ||||||| ||||||| ||||| |||||||||||||||||||||||    
T  20542600 ggaatccataaataaaatttctatcttgtaaatataaactgtcactttttat 20542651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 48743622 - 48743577
Alignment:
Q  157 agggtcttgttgaccagtgccccggggccggggcactggttaaggaa 203  Q
    ||||||||||| ||||||||||||||| | |||||||||||||||||    
T  48743622 agggtcttgttaaccagtgccccgggggc-gggcactggttaaggaa 48743577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 16838 - 16917
Alignment:
Q  203 atctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||||||||| | ||||||||||| ||||||||||||||||||||||| | | |||||| | |||||||||||||||||    
T  16838 atctataaatagagtttctgtcttgaaaatataaactgtcactttttatcaagtaataattatataattttttaataaaa 16917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 1094 - 1192
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||| ||||||| ||| ||| |||||||| ||||| | ||||| ||||||||||||||||||||||||| | |||||| |||| | ||||||||||||    
T  1094 ccgggacactggtcaagaaatttataaatagaatttttttcttgaaaatataaactgtcactttttattaagtaataattacattactttttaataaaa 1192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 38924 - 38827
Alignment:
Q  185 cggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    ||||| |||||||||  |||||||||||| ||||| | ||||||||||||||||||||| ||||||| | | |||||| |||| | ||||||||||||    
T  38924 cggggtactggttaaaaaatctataaatagaatttatatcttggaaatataaactgtcattttttatcaagtaataattacattactttttaataaaa 38827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 22413 - 22480
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttat 251  Q
    ||||| ||||| ||||||||||||||||||||| || ||| |||||||||||||| ||||||||||||    
T  22413 ccgggacactgattaaggaatctataaatataacttttgtgttggaaatataaaccgtcactttttat 22480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 18243299 - 18243363
Alignment:
Q  190 cactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttatta 253  Q
    |||||||||||||||||||||||| || ||| ||| ||||||||||||||| |||||||||||||    
T  18243299 cactggttaaggaatctataaataaaattttttgttttggaaatataaactttcactttttatta 18243363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 19889870 - 19889775
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataa-tttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaat 278  Q
    ||||||||||||||||| |||||||||||| || ||| ||| ||||||||||||  |||||| |||||||| | |||||| |||| | ||||||||    
T  19889870 ccggggcactggttaagaaatctataaatagaattttatgttttggaaatataatatgtcaccttttattaagtaataattacattactttttaat 19889775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 40574134 - 40574196
Alignment:
Q  186 ggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttt 248  Q
    |||||||||||||||||||||| ||||| || || ||||||||||||||||| ||| ||||||    
T  40574134 ggggcactggttaaggaatctacaaatagaaattttgtcttggaaatataaaatgtaactttt 40574196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 23760588 - 23760637
Alignment:
Q  190 cactggttaaggaatctataaatataatttctgtcttggaaatataaact 239  Q
    |||||||||| ||||||||||||||||||| ||||||  |||||||||||    
T  23760588 cactggttaacgaatctataaatataatttatgtcttaaaaatataaact 23760637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 21646482 - 21646560
Alignment:
Q  200 ggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaat 278  Q
    |||||||||| ||| ||||| |||||||||||||||||| |||||| |||||||| | |||||| |||| | ||||||||    
T  21646482 ggaatctatacatagaattttctgtcttggaaatataaagtgtcac-ttttattaagtaataattacattactttttaat 21646560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 23788402 - 23788493
Alignment:
Q  191 actggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||||||  |||||||||||| ||||| | | ||| ||||||||| | ||| ||||||||| | |||||| |||| | ||||||||||||    
T  23788402 actggttaaaaaatctataaatagaatttatattttgaaaatataaattatcattttttattaagtaataattacattactttttaataaaa 23788493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 37913017 - 37913091
Alignment:
Q  208 taaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||| ||||| | ||||| |||||||||| |||||||||||| | | |||||| |||| | ||||||||||||    
T  37913017 taaatagaatttttatcttgaaaatataaaccgtcactttttatcaagtaataatcacattaatttttaataaaa 37913091  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 31807729 - 31807785
Alignment:
Q  146 gttaaaaaacaagggtcttgttgaccagtgccccggggccggggcactggttaaggaa 203  Q
    ||||||||| || |||| |||| |||||||||||| || |||||||||||||||||||    
T  31807729 gttaaaaaaaaaaggtcatgttaaccagtgccccgtgg-cggggcactggttaaggaa 31807785  T

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Target: scaffold0078 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 861 - 920
Alignment:
Q  195 gttaaggaatctataaatataattt-ctgtcttggaaatataaactgtcactttttatta 253  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||    
T  861 gttaaggaatctataaatagaattttctgtcttggaaatataaactatcattttttatta 920  T

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Target: scaffold0079 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 51761 - 51672
Alignment:
Q  193 tggttaaggaatctataaatataatttctgtcttggaaatataaactgtcactttttattacgcaataatgacataattttttaataaaa 282  Q
    |||||||||||| || ||||| ||||| |||||| |||||||||| ||| |||||| |||| | ||| || |||||||||||| ||||||    
T  51761 tggttaaggaatttacaaataaaatttttgtctttgaaatataaaatgttacttttgattaagtaatgattacataattttttcataaaa 51672  T

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Target: scaffold0068 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 52136 - 52070
Alignment:
Q  184 ccggggcactggttaaggaatctataaatataatttctgtcttggaaatataaactgtcacttttta 250  Q
    |||| |||| ||||||| |||||||||||| ||||  |||||| |||||||||| ||||| ||||||    
T  52136 ccggagcacgggttaagaaatctataaatagaattgttgtcttagaaatataaattgtcatttttta 52070  T

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