View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11171A_low_103 (Length: 288)
Name: NF11171A_low_103
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_103 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 16569666 - 16569398
Alignment:
| Q |
14 |
gaacgtcaaaatgtacatgtttactatttacgctaatgtaaactaatttctgtgttttttctcgcttatccgtgctttgtctccactagttatatagtct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |
|
|
| T |
16569666 |
gaacgtcaaaatgtacatgtttactatttacgctaatgtaaactaatttctgtgttttttctcgcttatccgtgctttgtctcaaatagttataaagtct |
16569567 |
T |
|
| Q |
114 |
tctttgtttccctcatcaattatagttgtttacactatctgcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagcttt |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16569566 |
tctttgtttccctcatcaattatagatgtttacactatctgcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcggaagcttt |
16569467 |
T |
|
| Q |
214 |
cgaaaatggaagcagtaaagaaagaacagtccaaaagaatgaaaacctcttcatgaattggcctttaat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16569466 |
agaaaatggaagcagtaaagaaagaacagtccaaaagaatgaaaacctcttcatgaattggcctttaat |
16569398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 54 - 282
Target Start/End: Complemental strand, 16528127 - 16527899
Alignment:
| Q |
54 |
aactaatttctgtgttttttctcgcttatccgtgctttgtctccactagttatatagtcttctttgtttccctcatcaattatagttgtttacactatct |
153 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| | ||||| || ||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16528127 |
aactaatttctgtgttttttctatcttatccgtgctttgtctccactgttcatataatcgtctctgtttccctcatcaattatagttgtgtacactatct |
16528028 |
T |
|
| Q |
154 |
gcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagctttcgaaaatggaagcagtaaagaaagaacagtccaaaagaat |
253 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||| |||| || ||| || |||||||| ||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
16528027 |
gcaggaaacacttcacaatcacaatggtaacaaagagtccacagatgacgccgaagctttagaaaatggaagcaacaaagaaaagacagtccgaaagaat |
16527928 |
T |
|
| Q |
254 |
gaaaacctcttcatgaattggcctttaat |
282 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
16527927 |
gaaaacctctttatgaattggcctttaat |
16527899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 128 - 282
Target Start/End: Complemental strand, 16588250 - 16588097
Alignment:
| Q |
128 |
atcaattatagttgtttacactatctgcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagctttcgaaaatggaagca |
227 |
Q |
| |
|
||||||||||||| || | |||||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||| |||||||| ||||||||||||| |
|
|
| T |
16588250 |
atcaattatagttattaa-actatccgcaggaaacacttcacaatcacaatggtaacgaagagtccaaaggtaatgccgaagctttagaaaatggaagca |
16588152 |
T |
|
| Q |
228 |
gtaaagaaagaacagtccaaaagaatgaaaacctcttcatgaattggcctttaat |
282 |
Q |
| |
|
| ||||||| ||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16588151 |
gcaaagaaaagacagttcaaaagaatgaaaacctctttttgaattggcctttaat |
16588097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 276
Target Start/End: Complemental strand, 16519603 - 16519471
Alignment:
| Q |
153 |
tgcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagctttcgaaaatggaagca-----gt----aaagaaagaacagt |
243 |
Q |
| |
|
||||||||||||||||||| |||||||||||| || |||| || |||||| |||||| | ||||||||||||| || ||||||| | ||| |
|
|
| T |
16519603 |
tgcaggaaacacttcacaagcacaatggtagcagtgagtccatagatgatgctgaagctatagaaaatggaagcaaaaaggttgacaaagaaaagatagt |
16519504 |
T |
|
| Q |
244 |
ccaaaagaatgaaaacctcttcatgaattggcc |
276 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
16519503 |
tcaaaagaatgaaaacctcttgatgaattggcc |
16519471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 9008905 - 9008958
Alignment:
| Q |
229 |
taaagaaagaacagtccaaaagaatgaaaacctcttcatgaattggcctttaat |
282 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
9008905 |
taaagaaaatacagtccaaaagaatgaaattctcttcaggaattggcctttaat |
9008958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University