View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_106 (Length: 287)
Name: NF11171A_low_106
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_106 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 287
Target Start/End: Complemental strand, 56488044 - 56487764
Alignment:
| Q |
7 |
gaatcacagaagaaccatacaaagtgttgttgttgttttgtctggcaacataacgagcaatagcattgctctcaaagacaggaccatcaggggtttccaa |
106 |
Q |
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| T |
56488044 |
gaatcaaagaagaaccatacaaagtgttgttgttgttttgtctggcaacataacgagcaatagcattgctctcaaagacaggaccatcaggggtttccaa |
56487945 |
T |
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| Q |
107 |
gacaggaaccttgccaagaggattcatgtcgagaaattgaggtgtcttgttagagacacccatctcaaaattgggagtcaattgaagttggacagaagca |
206 |
Q |
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| T |
56487944 |
gacaggaaccttgccaagaggattcatgtcgagaaattgaggtgtcttgttagagacacccatctcaaaattgggagtcaattgaagttggacagaagca |
56487845 |
T |
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| Q |
207 |
tattcagctgcaatgcgtgccttgtaagcatttttgttgatttcaccggaatgaaggatctaattgataattagggttaga |
287 |
Q |
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| T |
56487844 |
tattcagctgcaatgcgtgccttgtaagcatttttgttgatttcaccggaatgaaggatctaattgataattagggttaga |
56487764 |
T |
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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 214186 - 214124
Alignment:
| Q |
55 |
cataacgagcaatagcattgctctcaaagacaggaccatcaggggtttccaagacaggaacct |
117 |
Q |
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| T |
214186 |
catagcgagcaatggcattactctcaaagacaggaccatcaggagtttccaagacaggaacct |
214124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 214047 - 213941
Alignment:
| Q |
114 |
accttgccaagaggattcatgtcgagaaattgaggtgtcttgttagagacacccatctcaaaattgggagtcaattgaagttggacagaagcatattcag |
213 |
Q |
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| T |
214047 |
acctttccaatagggttcatgttgatgaattgaggggttttgttagaaacacccatctgaaaatcaggagtcaattgaacttgtacaccaacatattcag |
213948 |
T |
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| Q |
214 |
ctgcaat |
220 |
Q |
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| T |
213947 |
cagcaat |
213941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 23535062 - 23535124
Alignment:
| Q |
55 |
cataacgagcaatagcattgctctcaaagacaggaccatcaggggtttccaagacaggaacct |
117 |
Q |
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| T |
23535062 |
catagcgagccatcgcattgctctcaaagacgggaccatcaggtgtttccaagaccggaacct |
23535124 |
T |
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