View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_107 (Length: 286)
Name: NF11171A_low_107
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_107 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 267
Target Start/End: Complemental strand, 48669653 - 48669392
Alignment:
| Q |
6 |
gtagataatactcggatcaaccacgcgttgattgattaatttaattaaatagtaatagatgcatttgcatatttataaagtttttgtgtgcataccttga |
105 |
Q |
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| T |
48669653 |
gtagataacacttggatcaaccacgcgttgattgattaatttaattaaatagtaatagatgcatttgcatatttataaagtttttgtgtgcataccttga |
48669554 |
T |
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| Q |
106 |
gttcatcatcaagttgatagcatgcaaaatcaatgagataaataggacgtggccttgacatgaagtaaagagtgaaagtgaaaacaaagacagcaagaga |
205 |
Q |
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| T |
48669553 |
gttcatcatcaggttgatagcatgcaaaatcaatgagataaataggacgtggccttgacatgaagtaaagagtgaaagtgaaaacaaagacagcaagaga |
48669454 |
T |
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| Q |
206 |
agagagaacagatgcaagatcataagttgcatcttcccaaatcttcttccaaagatcttctt |
267 |
Q |
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| T |
48669453 |
agagagaacagatgcaagatcataagttgcatcttcccaaatcttcttccaaagatcttctt |
48669392 |
T |
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