View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_110 (Length: 282)
Name: NF11171A_low_110
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_110 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 282
Target Start/End: Complemental strand, 3317230 - 3316950
Alignment:
| Q |
5 |
agccaatgagatggacatcaaaattaaagaaaacaaactttttgagtgatctgagaattacaggtaggtgtagtttgatttttgatcaaatcgattggga |
104 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3317230 |
agcctatgagatgcacatcaaaattaaagaaaacaaacttttcgagtgatctgagaattacaggttggtgtagtttgatttttgatcaaatcgattggga |
3317131 |
T |
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| Q |
105 |
tttgggtttatattaagagaagacatagcagcacaaatatcttggtcattttcctacaaatttatatcatggttgatgtctgtgtatatatcgtggctgg |
204 |
Q |
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| T |
3317130 |
tttgggtttatattaagagaagacatagcagcacaaatatcttggtcattttcctacaaatttatatcatggatgatgtctgtgtatatatcgtggctgg |
3317031 |
T |
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| Q |
205 |
catacatgtctatgtcgacttcatacgatgagaactca---agctttaaaagtatatcctagaactgaaacaaacacaaca |
282 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||| |||||| |||||||||||| |
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| T |
3317030 |
catacatgtctatgtcgacttcatacgatgtgaactcaacgagctttaaaagtctctcctaaaactgacacaaacacaaca |
3316950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 3313687 - 3313635
Alignment:
| Q |
119 |
aagagaagacatagcagcacaaatatcttggtcattttcctacaaatttatat |
171 |
Q |
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| T |
3313687 |
aagagaagacataatagcataaatatcttggtcattttcctacaaatttatat |
3313635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 3320394 - 3320342
Alignment:
| Q |
119 |
aagagaagacatagcagcacaaatatcttggtcattttcctacaaatttatat |
171 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
3320394 |
aagagaagacataatagcataaatatcttggtcattttcctacaaatttatat |
3320342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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