View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_115 (Length: 277)
Name: NF11171A_low_115
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_115 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 5689881 - 5690136
Alignment:
| Q |
9 |
agaaggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgc |
108 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5689881 |
agaaggctcaacatgtttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgc |
5689980 |
T |
|
| Q |
109 |
aacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgcta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5689981 |
aacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgcta |
5690080 |
T |
|
| Q |
209 |
agtgaccataatctccaaaatggaaactgtagattgcttcatatctatcacctttc |
264 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5690081 |
agtgaccataatcaccaaaatggaaactgtagattgcttcatatctatcacctttc |
5690136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 25914568 - 25914813
Alignment:
| Q |
12 |
aggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaac |
111 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| | | |
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| T |
25914568 |
aggctcaactggtttaccaagaagctcttgtggcaaatccttaatacccttcaaataaaatgtgtagaaaatcttaaatggaaaaacaatttgattgagc |
25914667 |
T |
|
| Q |
112 |
ttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagt |
211 |
Q |
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| T |
25914668 |
ttcacttggcctgtaacaccttcaaaaattccagtaccaccagtcacagttagatatgtgtcctc---ataggttaggtaaggtccttgcacagctattt |
25914764 |
T |
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| Q |
212 |
gaccataatctccaaaatggaaactgtagattgcttcatatctatcacc |
260 |
Q |
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||||||| ||||||| || ||||||||||||||||||||||| ||||| |
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| T |
25914765 |
gaccatagtctccaacgtgaaaactgtagattgcttcatatctgtcacc |
25914813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 6792803 - 6792563
Alignment:
| Q |
12 |
aggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaac |
111 |
Q |
| |
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|||||||| | | ||| |||||| ||| |||||||||||||||||||| | | ||||||||| || || ||||| |||||||| ||||||||||| | | |
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| T |
6792803 |
aggctcaataggattaacaagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacacaatttgatgaagc |
6792704 |
T |
|
| Q |
112 |
ttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagt |
211 |
Q |
| |
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|| |||||||| | |||||||||||||||||||| |||||||||||||| | |||||| ||||| ||| |||||||| | ||||| || | | | |
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| T |
6792703 |
ttaacttgaccataaacaccttcaaatattccagttccaccagtcacagccaaataagtatcctcctcataagttaaataagaaccttgcacagaaatat |
6792604 |
T |
|
| Q |
212 |
gaccataatctccaaaatggaaactgtagattgcttcatat |
252 |
Q |
| |
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||||||| |||||||||| ||||| || |||||||||||| |
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| T |
6792603 |
gaccatactctccaaaataaaaactatatattgcttcatat |
6792563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 6800246 - 6800131
Alignment:
| Q |
40 |
tgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaata |
139 |
Q |
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|||||||||||||||||||| | | ||||||||| || || | ||| |||||||| ||||||||||| | ||| |||||||| | |||||||||||||| |
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| T |
6800246 |
tgtggcaaatccttaatacccataagataaaatgtgtaaaatagcttaaatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaata |
6800147 |
T |
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| Q |
140 |
ttccagaaccaccagt |
155 |
Q |
| |
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|||||| |||||||| |
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| T |
6800146 |
ttccagttccaccagt |
6800131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 260
Target Start/End: Complemental strand, 22227490 - 22227359
Alignment:
| Q |
126 |
aacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctcca |
225 |
Q |
| |
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|||||||||||| |||||||||||||| || | ||| ||||| ||||| | | || || | ||| |||||||| |||| || |||||||| |||||| |
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| T |
22227490 |
aacaccttcaaagattccagaaccacctgttatagcaagatatgtgtctt---ggtatgtgagataaggtccttgtactgatatatgaccatagtctcca |
22227394 |
T |
|
| Q |
226 |
aaatggaaactgtagattgcttcatatctatcacc |
260 |
Q |
| |
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|| | ||| ||||| |||||||||||||||||||| |
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| T |
22227393 |
aagtagaagctgtaaattgcttcatatctatcacc |
22227359 |
T |
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