View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_116 (Length: 277)
Name: NF11171A_low_116
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_116 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 37704699 - 37704454
Alignment:
| Q |
13 |
atgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatga |
112 |
Q |
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| T |
37704699 |
atgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatga |
37704600 |
T |
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| Q |
113 |
acaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaat |
212 |
Q |
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| T |
37704599 |
acaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaat |
37704500 |
T |
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| Q |
213 |
acgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
258 |
Q |
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| T |
37704499 |
acgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
37704454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 37699224 - 37698974
Alignment:
| Q |
13 |
atgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagttta |
108 |
Q |
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| T |
37699224 |
atgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttggttttccaagatgttatttagttta |
37699125 |
T |
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| Q |
109 |
atgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagg |
208 |
Q |
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| T |
37699124 |
atgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatgaaaagcacccccaacacaaaataagg |
37699025 |
T |
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| Q |
209 |
gaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
257 |
Q |
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| T |
37699024 |
gaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 37437764 - 37437520
Alignment:
| Q |
13 |
atgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagttta |
108 |
Q |
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| T |
37437764 |
atgaatttgttatcttattatcacaacttgcaataagattccaactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagttta |
37437669 |
T |
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| Q |
109 |
atgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagg |
208 |
Q |
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| T |
37437668 |
atgaacaccaaacttttctatgattgttattgaattaatattgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagg |
37437570 |
T |
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| Q |
209 |
gaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
258 |
Q |
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| T |
37437569 |
gaatagctagactgaatttgtaaacaatctaataagtcagactttttggt |
37437520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 37698861 - 37698636
Alignment:
| Q |
13 |
atgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttagttt |
107 |
Q |
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| T |
37698861 |
atgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttagttt |
37698762 |
T |
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| Q |
108 |
aatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataag |
207 |
Q |
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| T |
37698761 |
aacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaataag |
37698687 |
T |
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| Q |
208 |
ggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
258 |
Q |
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| T |
37698686 |
ggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 16841007 - 16841109
Alignment:
| Q |
28 |
tatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttc |
126 |
Q |
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| T |
16841007 |
tatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttg |
16841105 |
T |
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| Q |
127 |
tatg |
130 |
Q |
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|||| |
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| T |
16841106 |
tatg |
16841109 |
T |
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