View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_118 (Length: 273)
Name: NF11171A_low_118
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_118 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 39625720 - 39625449
Alignment:
| Q |
13 |
aatatagggaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaa-ctatttaaggaaatttaaactaagatcgaaagacctagttat |
111 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39625720 |
aatataggaaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaaactatttaaggaaatttaaactaagatcgaaagacctagttat |
39625621 |
T |
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| Q |
112 |
tcatcaaaattagtattagcttacaaattaaacagagaaatattgcatcggaattgattaagattgatgtgcgatgggaaggttgagtaaagaagagaag |
211 |
Q |
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| T |
39625620 |
tcatcaaaattagtattagcttacaaa-----cagagaaatattgcatcggaattgattaagattgatgtgcgatgggaatgttgagtaaagaagagaag |
39625526 |
T |
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| Q |
212 |
gaaaaag---------------cagcgacaatggtggcgacagtgagaggaagtaaacgaaagggtattgcaaagag |
273 |
Q |
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| T |
39625525 |
gaaaaagcagcagtagggatggcagcgacaatggtggcgacagtgagaggaagtaaacaaaagggtattgcaaagag |
39625449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 39635270 - 39634999
Alignment:
| Q |
13 |
aatatagggaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaa-ctatttaaggaaatttaaactaagatcgaaagacctagttat |
111 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39635270 |
aatataggaaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaaactatttaaggaaatttaaactaagatcgaaagacctagttat |
39635171 |
T |
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| Q |
112 |
tcatcaaaattagtattagcttacaaattaaacagagaaatattgcatcggaattgattaagattgatgtgcgatgggaaggttgagtaaagaagagaag |
211 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39635170 |
tcatcaaaattagtattagcttacaaa-----cagagaaatattgcatcggaattgattaagattgatgtgcgatgggaatgttgagtaaagaagagaag |
39635076 |
T |
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| Q |
212 |
gaaaaag---------------cagcgacaatggtggcgacagtgagaggaagtaaacgaaagggtattgcaaagag |
273 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39635075 |
gaaaaagcagcagtagggatggcagcgacaatggtggcgacagtgagaggaagtaaacaaaagggtattgcaaagag |
39634999 |
T |
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