View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_120 (Length: 272)
Name: NF11171A_low_120
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_120 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 28298745 - 28298974
Alignment:
| Q |
20 |
atcaccgctgccaactcacccacctcactgagtcgactcactcacacnnnnnnnnnttcaacaccataacaactcgacttcgcccaactcgctgagtcaa |
119 |
Q |
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| T |
28298745 |
atcaccgctgccaactcgcccacctcactgagtcgactcactcaca--aaaaaaaatccaacaccataacaactcgactccgcccaactcgctgagtcaa |
28298842 |
T |
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| Q |
120 |
ctcgcgaacaacaacaaccaaatccaaaatcacagtaactagctaatcacaaccacaacaattttccatgtgccttagctttgcagattctattcaatct |
219 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28298843 |
ctcgcgcacaacaacaaccaaatccaaaatcacagtaactagctagtcacaaccgcaacaattttccatgtgccttagctttgccgattctattcaatct |
28298942 |
T |
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| Q |
220 |
tagaccattttcatgtaactgttcaactgggt |
251 |
Q |
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|||||||||||||||| ||||||||||||||| |
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| T |
28298943 |
tagaccattttcatgtgactgttcaactgggt |
28298974 |
T |
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